Non-Coding RNA Search

Ss1.1-Pig2-52K14.5

Sequence:


               
               ACACACACACACACACACACACATGCACACACACACACACACACACACACTCCCTCTGCG
TATCTGAGCGCGCCCCTAGCACTGGGTCTTACCTTGCACCTTCTTCAGGATTTTATATGT
GAAGAGATTTTTATATAGATTTTTTTCCTTCCCTTCCCCCCCCCCGAAACACTTTATACT
TTTTAAAAAGCAATCCCGGGTGGCTTATGCCTCCAACACTGGCTCCCCCTCTGTCTCCAG
CTGCCTGCTTGGGCTTCTGGGCCCATGGCTCCATCCTGGGGTCTGGCAGCCACCATGGCA
GGGCGGACTCTGGTGGGAGAGGCAGGGAGCCCACCACCCTCTTCCCACCCTACCTCCCAC
TAACTACTTCCTGCCCTGGGGGGACCCACTCCCTGGGACTCTGGACCGAGGGACAGATGG
GCAGAGGGAGCCAGCAGCTGTCCCCACAGCCCCACCTCCTCTGAGGGGTGCCGGGCACAG
ATCTGCTGGAGCCGCCCCAAGCAGGCATTTCTCTCCTGCTCCATGAGCCTTCTTAACTTA
ATAAAATGTTCCAGCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACACACACACACACACACACATGCACACACACACACACACACACACACTCCCTCTGCG
TATCTGAGCGCGCCCCTAGCACTGGGTCTTACCTTGCACCTTCTTCAGGATTTTATATGT
GAAGAGATTTTTATATAGATTTTTTTCCTTCCCTTCCCCCCCCCCGAAACACTTTATACT
TTTTAAAAAGCAATCCCGGGTGGCTTATGCCTCCAACACTGGCTCCCCCTCTGTCTCCAG
CTGCCTGCTTGGGCTTCTGGGCCCATGGCTCCATCCTGGGGTCTGGCAGCCACCATGGCA
GGGCGGACTCTGGTGGGAGAGGCAGGGAGCCCACCACCCTCTTCCCACCCTACCTCCCAC
TAACTACTTCCTGCCCTGGGGGGACCCACTCCCTGGGACTCTGGACCGAGGGACAGATGG
GCAGAGGGAGCCAGCAGCTGTCCCCACAGCCCCACCTCCTCTGAGGGGTGCCGGGCACAG
ATCTGCTGGAGCCGCCCCAAGCAGGCATTTCTCTCCTGCTCCATGAGCCTTCTTAACTTA
ATAAAATGTTCCAGCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               5-123, - strand, RNAz p=0.651119
               

               
               194-558, - strand, RNAz p=0.999767

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-123, - strand, RNAz p=0.651119
               

               
               194-558, - strand, RNAz p=0.999767

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               271-388, + strand, RNAmicro p=0.989682
               

               
               492-578, - strand, RNAmicro p=0.965939

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               271-388, + strand, RNAmicro p=0.989682
               

               
               492-578, - strand, RNAmicro p=0.965939

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-558, gnl|bosTau2|chr5 (67211852-67211283)
               

               
               2-558, gnl|Hg17|chr22 (36494422-36495016)
               

               
               2-558, gnl|Mm7|chr15 (79088304-79088817)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-558, gnl|bosTau2|chr5 (67211852-67211283)
               

               
               2-558, gnl|Hg17|chr22 (36494422-36495016)
               

               
               2-558, gnl|Mm7|chr15 (79088304-79088817)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               med (0.116252)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               med (0.116252)

	5-123, - strand, RNAz p=0.651119
	194-558, - strand, RNAz p=0.999767

	271-388, + strand, RNAmicro p=0.989682
	492-578, - strand, RNAmicro p=0.965939

	2-558, gnl\|bosTau2\|chr5 (67211852-67211283)
	2-558, gnl\|Hg17\|chr22 (36494422-36495016)
	2-558, gnl\|Mm7\|chr15 (79088304-79088817)

	nlu (0.191681)
	fty (0.17584)
	ton (0.1755)
	hyp (0.142837)
	ute (0.132784)
	cov (0.132153)
	eru (0.120048)
	med (0.116252)