Non-Coding RNA Search

Ss1.1-Pig2-53A06.5

Sequence:


               
               AACGGAATTGGATGTGGTGCCAGGAAGAGATGGACTAGCTAGCTACAATCATTCCCAGGT
TTCTGTTCAGCCTGTGACAACCACAGGGCCAGAACACAGCAAGCCCCTTGAGAAGTCAGA
GGGTCTATTTGCCCAGGATAGAGATCCAAGATTTTCAGAAATCTACTCCAATATCAATAC
AGATCAGAGTAAAGGCATCTCCTCCAGCACTGTCCCTGCCACCCAACAGCTATTCTCCCA
GGGCAACACATTCCCTCCTACCCCCCGGCCGGCAGAGAATTTCAGAAATAGTGGTCTGGC
CCCTCCTGTAACCATTGTCCAGCCTTCAGCTTCTGCAGGGCAGATGTTGGCCCAGATTTC
CCGCCACTCCAATCCTACCCAGGAAGCAGCCCCAGCGTGGACCCCTAGCACCCGCCCAGG
CTTCTCTGCCCAGCAGGTGGCTACCCAGGCTACAGCCAAGACTCGTTCTTCCCAATTTGG
TGTAGGCAACTTCCAGACTCCATCATCTTTTAGCCCCATGTCCCTCCCTGGTGCTTCTAC
TGCATCACCTGGTGCTGCTGCCTACCCTAGTCTCACCAATCGTGGATCCAGCTTTGCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACGGAATTGGATGTGGTGCCAGGAAGAGATGGACTAGCTAGCTACAATCATTCCCAGGT
TTCTGTTCAGCCTGTGACAACCACAGGGCCAGAACACAGCAAGCCCCTTGAGAAGTCAGA
GGGTCTATTTGCCCAGGATAGAGATCCAAGATTTTCAGAAATCTACTCCAATATCAATAC
AGATCAGAGTAAAGGCATCTCCTCCAGCACTGTCCCTGCCACCCAACAGCTATTCTCCCA
GGGCAACACATTCCCTCCTACCCCCCGGCCGGCAGAGAATTTCAGAAATAGTGGTCTGGC
CCCTCCTGTAACCATTGTCCAGCCTTCAGCTTCTGCAGGGCAGATGTTGGCCCAGATTTC
CCGCCACTCCAATCCTACCCAGGAAGCAGCCCCAGCGTGGACCCCTAGCACCCGCCCAGG
CTTCTCTGCCCAGCAGGTGGCTACCCAGGCTACAGCCAAGACTCGTTCTTCCCAATTTGG
TGTAGGCAACTTCCAGACTCCATCATCTTTTAGCCCCATGTCCCTCCCTGGTGCTTCTAC
TGCATCACCTGGTGCTGCTGCCTACCCTAGTCTCACCAATCGTGGATCCAGCTTTGCTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               50-167, + strand, RNAz p=0.568859

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               50-167, + strand, RNAz p=0.568859

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               50-180, gnl|bosTau2|chr3 (16764167-16764298)
               

               
               50-180, gnl|Hg17|chr1 (147602761-147602633)
               

               
               50-180, gnl|Mm7|chr3 (95364194-95364325)
               


               
               284-433, gnl|bosTau2|chr3 (16764975-16765124)
               

               
               284-433, gnl|Hg17|chr1 (147601957-147601808)
               

               
               284-433, gnl|Mm7|chr3 (95364970-95365119)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-180, gnl|bosTau2|chr3 (16764167-16764298)
               

               
               50-180, gnl|Hg17|chr1 (147602761-147602633)
               

               
               50-180, gnl|Mm7|chr3 (95364194-95364325)
               


               
               284-433, gnl|bosTau2|chr3 (16764975-16765124)
               

               
               284-433, gnl|Hg17|chr1 (147601957-147601808)
               

               
               284-433, gnl|Mm7|chr3 (95364970-95365119)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	50-180, gnl\|bosTau2\|chr3 (16764167-16764298)
	50-180, gnl\|Hg17\|chr1 (147602761-147602633)
	50-180, gnl\|Mm7\|chr3 (95364194-95364325)

	284-433, gnl\|bosTau2\|chr3 (16764975-16765124)
	284-433, gnl\|Hg17\|chr1 (147601957-147601808)
	284-433, gnl\|Mm7\|chr3 (95364970-95365119)