Ss1.1-Pig2-53C24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCGGGAAACAATTTACTCCTGAAGAATATGAAGAATACAAAAGAAAAGTCATACCCAT ACGTTTACTGAACAGATTGTTCGAGAGCTGGCGATCGCCAACTGGAGTGGACTGTAAACT TGTGGGTCCAGAGACACTGTGTTTTTGTACACATAGGTATAAGCAACATAAAACTGGCTT TGAAGTGATTCCTCAGCGGCGCCCCATCAGTCTGCCGTGCCGAGTGCCAGGCTGCCTGTG CCGGGCTTACCTCTACGTGCCCCTCAGTGGGGCACAGCCCATTCGTTGCCGGTGCAAGCA CCTTGCCGATCAGCACAGTGCGGCGCCAGGCTTAGTCTGCAATGCCTGCTCTAAGTGTTC GGGATTTCACAGTTGCTTCACGTGTGCCTGTGGTCAGCCCGCACATGCCCATGACACAGT AGTGGAAACGAAGCAGGAAAGACTGGCTCAGGGGAAACCAGTGGGACGGGACGTTCCTTA TGCAGCAATGGGAGGACTAACTGGCTTCAGCTCGCTGGCGGAAGGCCACCTGCGGCTGGA TGACAGCGGAATTGGTGCACCTTCAGTTGAAGTTTTAGATGCTTCAGTTACAGCCACGGA CCATCCATTTCTAAGAGCATTTCAAGCATCATCTAACTCTCCTCCAGAAACACTCACAGA TGGTAATGAGGTTAAACTGAGAAATACTTTCGTTTGTAGTAAATAAGAATATGGATTGAT CTGTTTTTCGGATTACCGTCTCTCCTTCCCAGTATTATCGCAGTTTGATGATCGTTTTAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCGGGAAACAATTTACTCCTGAAGAATATGAAGAATACAAAAGAAAAGTCATACCCAT ACGTTTACTGAACAGATTGTTCGAGAGCTGGCGATCGCCAACTGGAGTGGACTGTAAACT TGTGGGTCCAGAGACACTGTGTTTTTGTACACATAGGTATAAGCAACATAAAACTGGCTT TGAAGTGATTCCTCAGCGGCGCCCCATCAGTCTGCCGTGCCGAGTGCCAGGCTGCCTGTG CCGGGCTTACCTCTACGTGCCCCTCAGTGGGGCACAGCCCATTCGTTGCCGGTGCAAGCA CCTTGCCGATCAGCACAGTGCGGCGCCAGGCTTAGTCTGCAATGCCTGCTCTAAGTGTTC GGGATTTCACAGTTGCTTCACGTGTGCCTGTGGTCAGCCCGCACATGCCCATGACACAGT AGTGGAAACGAAGCAGGAAAGACTGGCTCAGGGGAAACCAGTGGGACGGGACGTTCCTTA TGCAGCAATGGGAGGACTAACTGGCTTCAGCTCGCTGGCGGAAGGCCACCTGCGGCTGGA TGACAGCGGAATTGGTGCACCTTCAGTTGAAGTTTTAGATGCTTCAGTTACAGCCACGGA CCATCCATTTCTAAGAGCATTTCAAGCATCATCTAACTCTCCTCCAGAAACACTCACAGA TGGTAATGAGGTTAAACTGAGAAATACTTTCGTTTGTAGTAAATAAGAATATGGATTGAT CTGTTTTTCGGATTACCGTCTCTCCTTCCCAGTATTATCGCAGTTTGATGATCGTTTTAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 193-348, - strand, RNAz p=0.977306 | |
| 216-335, - strand, RNAz p=0.520426 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 193-348, - strand, RNAz p=0.977306 | |
| 216-335, - strand, RNAz p=0.520426 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 154-348, gnl|bosTau2|chr4 (41170079-41169885) | |
| 154-348, gnl|canFam2|chr14 (40288404-40288631) | |
| 154-348, gnl|danRer3|chr19 (22626699-22626472) | |
| 154-348, gnl|dasNov1|scaffold_30713 (4472-4253) | |
| 154-348, gnl|echTel1|scaffold_232123 (5749-5970) | |
| 154-348, gnl|fr1|chrUn (103688466-103688254) | |
| 154-348, gnl|galGal2|chr2 (30522484-30522705) | |
| 154-348, gnl|hg17|chr7 (23502101-23502325) | |
| 154-348, gnl|Hg17|chr7 (23502125-23502319) | |
| 154-348, gnl|mm7|chr6 (49336136-49336351) | |
| 154-348, gnl|Mm7|chr6 (49336151-49336345) | |
| 154-348, gnl|monDom2|scaffold_57 (3686845-3686624) | |
| 154-348, gnl|oryCun1|scaffold_165586 (9123-9341) | |
| 154-348, gnl|panTro1|chr6 (24576816-24577040) | |
| 154-348, gnl|rheMac2|chr3 (102556560-102556335) | |
| 154-348, gnl|rn3|chr4 (77768128-77768343) | |
| 154-348, gnl|tetNig1|chr21_random (1090354-1090549) | |
| 154-348, gnl|xenTro1|scaffold_29 (273735-273963) | |
| 350-556, gnl|bosTau2|chr4 (41167884-41167678) | |
| 350-556, gnl|Hg17|chr7 (23504251-23504457) | |
| 350-556, gnl|Mm7|chr6 (49338448-49338654) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 154-348, gnl|bosTau2|chr4 (41170079-41169885) | |
| 154-348, gnl|canFam2|chr14 (40288404-40288631) | |
| 154-348, gnl|danRer3|chr19 (22626699-22626472) | |
| 154-348, gnl|dasNov1|scaffold_30713 (4472-4253) | |
| 154-348, gnl|echTel1|scaffold_232123 (5749-5970) | |
| 154-348, gnl|fr1|chrUn (103688466-103688254) | |
| 154-348, gnl|galGal2|chr2 (30522484-30522705) | |
| 154-348, gnl|hg17|chr7 (23502101-23502325) | |
| 154-348, gnl|Hg17|chr7 (23502125-23502319) | |
| 154-348, gnl|mm7|chr6 (49336136-49336351) | |
| 154-348, gnl|Mm7|chr6 (49336151-49336345) | |
| 154-348, gnl|monDom2|scaffold_57 (3686845-3686624) | |
| 154-348, gnl|oryCun1|scaffold_165586 (9123-9341) | |
| 154-348, gnl|panTro1|chr6 (24576816-24577040) | |
| 154-348, gnl|rheMac2|chr3 (102556560-102556335) | |
| 154-348, gnl|rn3|chr4 (77768128-77768343) | |
| 154-348, gnl|tetNig1|chr21_random (1090354-1090549) | |
| 154-348, gnl|xenTro1|scaffold_29 (273735-273963) | |
| 350-556, gnl|bosTau2|chr4 (41167884-41167678) | |
| 350-556, gnl|Hg17|chr7 (23504251-23504457) | |
| 350-556, gnl|Mm7|chr6 (49338448-49338654) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) |