Non-Coding RNA Search

Ss1.1-Pig2-53J01.5

Sequence:


               
               ATGGGGCCCCCGGGGCCAAGGAGTGAAGATGACCGTGTCCTGGGGCCCGACGGTGTCAGC
ACGGCTGGCCTCAGGGGACGTCCACCGGACAGCTCCCCTGTCGGCCGCCCGCCGCCCTGC
CTCGGGGCGGGGAGACGGCGCGGACTCCCGTGTCCGGGTGTCCGGGGGGGCTTCAGGCTG
GCAGGTCCGTGGCAAAGCGCTGGAGACCCTCCTCCGCGGGGGCCCCTGGGAGGGCCCGGC
TGGAACGCGCAGCCCTTGGAAATGGGCTGATGTTGTCCCCATCACGGAAAGCGGGCGTGT
GCGCAGACCTGTGCGCCCCCCGCAGACACGCAGCGGCTACCAGCGTCTCCTGTTTGTTTT
CCACCAAGACTCCCCCCGGCCCCCGATTTCCTATAAATTTGCTTCATGTAAGCAGGTGCG
TAAGGACCCCGCCTTTGGTGAAATCCGGGATCGAGTGACTGTCTCGAGGCCAGGAGATGC
ATCTATTTTCAGATGCTTTGGAGCCAACAGCTTTAGCAGTTCCCAGCCCTTAGCAATGCC
TTAGCCGGGCCTCGCAGCTCACACTTTAGAGAGAATGGCAAATACAGAGAGAAGCGATGT
CTAAAGCATCAGGAAAGGTAGAAAAAAAATCTATTTTTGTACAAATGTAATTTTATCCCT
CATGTATACTTGGAGGGTGCGGCGGGAGGGGGGCTTGTTTTGTTTCTGCTTCTAGAGACG
GAGGCGAGAAGCTTTCTGAGCGAACGTTCGGACGTGAGGCGGAGCGGAGGAGGGGGCTCC
CGGGACGGGGCGCGCAGGCTTCGGACGACCCCCGCCGCGTCGCTGTGCGCCCTCCGGGCC
AGGAGATTGGGCCTGAGACTTTCAAGGGTTTTCTTCCCCTTTCGAGTAATTTTTAAGCCT
TGCTCTGTTCTGTCCGTGTTGCCAGCTGGCCTTCCTGCGACTCTGACTGTGAAATTACTT
GCCCACATGATTGTTCTCGAAGACACCGTGGCCGCAGGTGCCGGGGATGGATGGATCTTG
GGATTAGGATTGTGGAAAGAGAAAGGCAAAGAAAAGCCGTGAGAAGAGAAACAAACAAAA
ATGAGTGTTTAAAAATAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGGGCCCCCGGGGCCAAGGAGTGAAGATGACCGTGTCCTGGGGCCCGACGGTGTCAGC
ACGGCTGGCCTCAGGGGACGTCCACCGGACAGCTCCCCTGTCGGCCGCCCGCCGCCCTGC
CTCGGGGCGGGGAGACGGCGCGGACTCCCGTGTCCGGGTGTCCGGGGGGGCTTCAGGCTG
GCAGGTCCGTGGCAAAGCGCTGGAGACCCTCCTCCGCGGGGGCCCCTGGGAGGGCCCGGC
TGGAACGCGCAGCCCTTGGAAATGGGCTGATGTTGTCCCCATCACGGAAAGCGGGCGTGT
GCGCAGACCTGTGCGCCCCCCGCAGACACGCAGCGGCTACCAGCGTCTCCTGTTTGTTTT
CCACCAAGACTCCCCCCGGCCCCCGATTTCCTATAAATTTGCTTCATGTAAGCAGGTGCG
TAAGGACCCCGCCTTTGGTGAAATCCGGGATCGAGTGACTGTCTCGAGGCCAGGAGATGC
ATCTATTTTCAGATGCTTTGGAGCCAACAGCTTTAGCAGTTCCCAGCCCTTAGCAATGCC
TTAGCCGGGCCTCGCAGCTCACACTTTAGAGAGAATGGCAAATACAGAGAGAAGCGATGT
CTAAAGCATCAGGAAAGGTAGAAAAAAAATCTATTTTTGTACAAATGTAATTTTATCCCT
CATGTATACTTGGAGGGTGCGGCGGGAGGGGGGCTTGTTTTGTTTCTGCTTCTAGAGACG
GAGGCGAGAAGCTTTCTGAGCGAACGTTCGGACGTGAGGCGGAGCGGAGGAGGGGGCTCC
CGGGACGGGGCGCGCAGGCTTCGGACGACCCCCGCCGCGTCGCTGTGCGCCCTCCGGGCC
AGGAGATTGGGCCTGAGACTTTCAAGGGTTTTCTTCCCCTTTCGAGTAATTTTTAAGCCT
TGCTCTGTTCTGTCCGTGTTGCCAGCTGGCCTTCCTGCGACTCTGACTGTGAAATTACTT
GCCCACATGATTGTTCTCGAAGACACCGTGGCCGCAGGTGCCGGGGATGGATGGATCTTG
GGATTAGGATTGTGGAAAGAGAAAGGCAAAGAAAAGCCGTGAGAAGAGAAACAAACAAAA
ATGAGTGTTTAAAAATAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               408-567, - strand, RNAz p=0.617715
               

               
               452-570, - strand, RNAz p=0.737413

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               408-567, - strand, RNAz p=0.617715
               

               
               452-570, - strand, RNAz p=0.737413

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               296-725, gnl|bosTau2|chr11 (85129070-85129496)
               

               
               296-725, gnl|canFam2|chr9 (53916473-53916782)
               

               
               296-725, gnl|echTel1|scaffold_176040 (3131-2937)
               

               
               296-725, gnl|galGal2|chr17 (3069647-3069228)
               

               
               296-725, gnl|hg17|chr9 (134557498-134557815)
               

               
               296-725, gnl|Hg17|chr9 (134557545-134557998)
               

               
               296-725, gnl|mm7|chr2 (27769479-27769755)
               

               
               296-725, gnl|Mm7|chr2 (27769516-27769916)
               

               
               296-725, gnl|monDom2|scaffold_51 (11472937-11473263)
               

               
               296-725, gnl|panTro1|chr11 (119433397-119433714)
               

               
               296-725, gnl|rheMac2|chr15 (3855891-3855574)
               

               
               296-725, gnl|rn3|chr3 (6691946-6692213)
               


               
               848-1095, gnl|bosTau2|chr11 (85129566-85129804)
               

               
               848-1095, gnl|Hg17|chr9 (134558112-134558357)
               

               
               848-1095, gnl|Mm7|chr2 (27770015-27770247)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               296-725, gnl|bosTau2|chr11 (85129070-85129496)
               

               
               296-725, gnl|canFam2|chr9 (53916473-53916782)
               

               
               296-725, gnl|echTel1|scaffold_176040 (3131-2937)
               

               
               296-725, gnl|galGal2|chr17 (3069647-3069228)
               

               
               296-725, gnl|hg17|chr9 (134557498-134557815)
               

               
               296-725, gnl|Hg17|chr9 (134557545-134557998)
               

               
               296-725, gnl|mm7|chr2 (27769479-27769755)
               

               
               296-725, gnl|Mm7|chr2 (27769516-27769916)
               

               
               296-725, gnl|monDom2|scaffold_51 (11472937-11473263)
               

               
               296-725, gnl|panTro1|chr11 (119433397-119433714)
               

               
               296-725, gnl|rheMac2|chr15 (3855891-3855574)
               

               
               296-725, gnl|rn3|chr3 (6691946-6692213)
               


               
               848-1095, gnl|bosTau2|chr11 (85129566-85129804)
               

               
               848-1095, gnl|Hg17|chr9 (134558112-134558357)
               

               
               848-1095, gnl|Mm7|chr2 (27770015-27770247)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               cki (0.330469)
               

               
               sme (0.305437)
               

               
               jej (0.197844)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               cki (0.330469)
               

               
               sme (0.305437)
               

               
               jej (0.197844)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

	408-567, - strand, RNAz p=0.617715
	452-570, - strand, RNAz p=0.737413

	296-725, gnl\|bosTau2\|chr11 (85129070-85129496)
	296-725, gnl\|canFam2\|chr9 (53916473-53916782)
	296-725, gnl\|echTel1\|scaffold_176040 (3131-2937)
	296-725, gnl\|galGal2\|chr17 (3069647-3069228)
	296-725, gnl\|hg17\|chr9 (134557498-134557815)
	296-725, gnl\|Hg17\|chr9 (134557545-134557998)
	296-725, gnl\|mm7\|chr2 (27769479-27769755)
	296-725, gnl\|Mm7\|chr2 (27769516-27769916)
	296-725, gnl\|monDom2\|scaffold_51 (11472937-11473263)
	296-725, gnl\|panTro1\|chr11 (119433397-119433714)
	296-725, gnl\|rheMac2\|chr15 (3855891-3855574)
	296-725, gnl\|rn3\|chr3 (6691946-6692213)

	848-1095, gnl\|bosTau2\|chr11 (85129566-85129804)
	848-1095, gnl\|Hg17\|chr9 (134558112-134558357)
	848-1095, gnl\|Mm7\|chr2 (27770015-27770247)

	amn (0.417711)
	elu (0.385356)
	cki (0.330469)
	sme (0.305437)
	jej (0.197844)
	nep (0.183925)
	ill (0.175593)
	eye (0.170503)
	nje (0.16592)
	cli (0.152812)
	lun (0.150489)
	hyp (0.142837)
	pty (0.142714)
	che (0.136314)
	lyg (0.133103)
	ese (0.126502)
	eep (0.122564)
	eru (0.120048)
	ebs (0.118301)
	nbm (0.0993246)