Non-Coding RNA Search

Ss1.1-Pig2-53J22.5

Sequence:


               
               GATAAATCTGCGAAGAGAAGTAACAGGATGTGTGGAAGACAGCGAGATAAAGAGAAAACT
ACTTTGGAGTTTCCGAGAACCGAGAACCGTCCCTGGGGGAGCAGGTGGCAGGCTGTGAGG
CTCCCGCGTCCCCGCTGATTCCTGCACAGTTACGGAGGGAGAGTGTGCCAGAAATGGCTT
TGCTGCCGAATGCATTATCTTGCCATTTTCATAGCCCCGTACCGCACAAACGATCGCCTG
ATCGATCGGGAGGGAAAGGTAGAGTGGAAATTGATTTTTTGCAGAGACTGAGGCGCCGAA
TGATAGAGGGAAATAAACATTTTGCCTGGGATAAAAATGCTCTTGGTAAGTAATCTTATT
TTCTGCGGTTGAGAAGGAAACACATTGCTTCTCACTGCCCCATCCCCCACTCCATTCATT
TGTTTGCTCTCTGTATGTAAATCACGAGCTGGGTCAGTGGAAATTTTCTTTTTCTCCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATAAATCTGCGAAGAGAAGTAACAGGATGTGTGGAAGACAGCGAGATAAAGAGAAAACT
ACTTTGGAGTTTCCGAGAACCGAGAACCGTCCCTGGGGGAGCAGGTGGCAGGCTGTGAGG
CTCCCGCGTCCCCGCTGATTCCTGCACAGTTACGGAGGGAGAGTGTGCCAGAAATGGCTT
TGCTGCCGAATGCATTATCTTGCCATTTTCATAGCCCCGTACCGCACAAACGATCGCCTG
ATCGATCGGGAGGGAAAGGTAGAGTGGAAATTGATTTTTTGCAGAGACTGAGGCGCCGAA
TGATAGAGGGAAATAAACATTTTGCCTGGGATAAAAATGCTCTTGGTAAGTAATCTTATT
TTCTGCGGTTGAGAAGGAAACACATTGCTTCTCACTGCCCCATCCCCCACTCCATTCATT
TGTTTGCTCTCTGTATGTAAATCACGAGCTGGGTCAGTGGAAATTTTCTTTTTCTCCATC

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               62-250, gnl|bosTau2|chr16 (6163562-6163373)
               

               
               62-250, gnl|canFam2|chr38 (11180746-11180049)
               

               
               62-250, gnl|dasNov1|scaffold_19930 (38409-37749)
               

               
               62-250, gnl|echTel1|scaffold_302852 (100859-101571)
               

               
               62-250, gnl|hg17|chr1 (187178833-187179542)
               

               
               62-250, gnl|Hg17|chr1 (187179242-187179419)
               

               
               62-250, gnl|loxAfr1|scaffold_1919 (58486-59161)
               

               
               62-250, gnl|mm7|chr1 (146421463-146420758)
               

               
               62-250, gnl|Mm7|chr1 (146421084-146420872)
               

               
               62-250, gnl|monDom2|scaffold_16 (46772395-46773203)
               

               
               62-250, gnl|panTro1|chr1 (169736213-169736921)
               

               
               62-250, gnl|rheMac2|chr1 (180183963-180183254)
               

               
               62-250, gnl|rn3|chr13 (60598215-60597505)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               62-250, gnl|bosTau2|chr16 (6163562-6163373)
               

               
               62-250, gnl|canFam2|chr38 (11180746-11180049)
               

               
               62-250, gnl|dasNov1|scaffold_19930 (38409-37749)
               

               
               62-250, gnl|echTel1|scaffold_302852 (100859-101571)
               

               
               62-250, gnl|hg17|chr1 (187178833-187179542)
               

               
               62-250, gnl|Hg17|chr1 (187179242-187179419)
               

               
               62-250, gnl|loxAfr1|scaffold_1919 (58486-59161)
               

               
               62-250, gnl|mm7|chr1 (146421463-146420758)
               

               
               62-250, gnl|Mm7|chr1 (146421084-146420872)
               

               
               62-250, gnl|monDom2|scaffold_16 (46772395-46773203)
               

               
               62-250, gnl|panTro1|chr1 (169736213-169736921)
               

               
               62-250, gnl|rheMac2|chr1 (180183963-180183254)
               

               
               62-250, gnl|rn3|chr13 (60598215-60597505)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	62-250, gnl\|bosTau2\|chr16 (6163562-6163373)
	62-250, gnl\|canFam2\|chr38 (11180746-11180049)
	62-250, gnl\|dasNov1\|scaffold_19930 (38409-37749)
	62-250, gnl\|echTel1\|scaffold_302852 (100859-101571)
	62-250, gnl\|hg17\|chr1 (187178833-187179542)
	62-250, gnl\|Hg17\|chr1 (187179242-187179419)
	62-250, gnl\|loxAfr1\|scaffold_1919 (58486-59161)
	62-250, gnl\|mm7\|chr1 (146421463-146420758)
	62-250, gnl\|Mm7\|chr1 (146421084-146420872)
	62-250, gnl\|monDom2\|scaffold_16 (46772395-46773203)
	62-250, gnl\|panTro1\|chr1 (169736213-169736921)
	62-250, gnl\|rheMac2\|chr1 (180183963-180183254)
	62-250, gnl\|rn3\|chr13 (60598215-60597505)