Ss1.1-Pig2-53K20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATGGTCACCAGCAATTCTTTGCAATTGTACAGCTGATAGGAACACGCAAGCAAGCTGAA AATTTTGCTTATCGACTTGAGCTAAATGGTCATAGGCGGCGATTGACTTGGGAAGCCACT CCTCGATCTATTCATGAGGGAATTGCAACAGCCATTATGAATAGTGACTGCTTAGTCTTT GACACCAGCATTGCACAGCTTTTTGCAGAAAATGGCAATTTAGGCATCAATGTAACTATT TCCATGTGTTGAAATGGCAATCAAACATCTTCTGGCCAGTGTTTAAAACCGTTGCATTCA GTTTCACAGAGAATAAGGCACCCATCTGCCTACCAAGCTGAAACTTTTGGTAGGTGGAGG CCAAACACATGAAGGTAAATAAAAGGAAAGGCTGTTAAATACAGGAAACAGTTGCATGTA GTAACACTAATATATTTAAAAATAAGTCAACAGTAAACCACTGAAAAAATATATATATAT ACACCCAAGATGGGCATCTTTTGTATTAAGAAAGGAAGCATTGTAAAATAATTCTGGGAA TTTGTGTTTGTTGTAGATTGAGTGTACTGTTGGAAAATACTGAGTTGTGTTTTTTTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATGGTCACCAGCAATTCTTTGCAATTGTACAGCTGATAGGAACACGCAAGCAAGCTGAA AATTTTGCTTATCGACTTGAGCTAAATGGTCATAGGCGGCGATTGACTTGGGAAGCCACT CCTCGATCTATTCATGAGGGAATTGCAACAGCCATTATGAATAGTGACTGCTTAGTCTTT GACACCAGCATTGCACAGCTTTTTGCAGAAAATGGCAATTTAGGCATCAATGTAACTATT TCCATGTGTTGAAATGGCAATCAAACATCTTCTGGCCAGTGTTTAAAACCGTTGCATTCA GTTTCACAGAGAATAAGGCACCCATCTGCCTACCAAGCTGAAACTTTTGGTAGGTGGAGG CCAAACACATGAAGGTAAATAAAAGGAAAGGCTGTTAAATACAGGAAACAGTTGCATGTA GTAACACTAATATATTTAAAAATAAGTCAACAGTAAACCACTGAAAAAATATATATATAT ACACCCAAGATGGGCATCTTTTGTATTAAGAAAGGAAGCATTGTAAAATAATTCTGGGAA TTTGTGTTTGTTGTAGATTGAGTGTACTGTTGGAAAATACTGAGTTGTGTTTTTTTTTTT |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-251, gnl|bosTau2|chr1 (74059612-74059362) | |
| 1-251, gnl|canFam2|chr22 (8330331-8330148) | |
| 1-251, gnl|canFam2|chr23 (48420674-48420938) | |
| 1-251, gnl|danRer3|chr21 (36147636-36147372) | |
| 1-251, gnl|danRer3|chr21 (36147640-36147456) | |
| 1-251, gnl|dasNov1|scaffold_288102 (261-423) | |
| 1-251, gnl|dasNov1|scaffold_32076 (7010-6747) | |
| 1-251, gnl|echTel1|scaffold_176266 (7391-7208) | |
| 1-251, gnl|echTel1|scaffold_288047 (42165-42429) | |
| 1-251, gnl|fr1|chrUn (146824213-146823949) | |
| 1-251, gnl|fr1|chrUn (146824217-146824033) | |
| 1-251, gnl|galGal2|chr1 (160054003-160054186) | |
| 1-251, gnl|galGal2|chr9 (23057459-23057195) | |
| 1-251, gnl|hg17|chr13 (45255545-45255728) | |
| 1-251, gnl|hg17|chr3 (151942634-151942898) | |
| 1-251, gnl|Hg17|chr3 (151942883-151942633) | |
| 1-251, gnl|loxAfr1|scaffold_27073 (24058-24224) | |
| 1-251, gnl|loxAfr1|scaffold_53140 (13049-13312) | |
| 1-251, gnl|mm7|chr14 (70206440-70206257) | |
| 1-251, gnl|mm7|chr3 (58804666-58804930) | |
| 1-251, gnl|Mm7|chr3 (58804915-58804665) | |
| 1-251, gnl|monDom2|scaffold_28 (22503058-22503322) | |
| 1-251, gnl|monDom2|scaffold_64 (8431797-8431980) | |
| 1-251, gnl|oryCun1|scaffold_176028 (44304-44040) | |
| 1-251, gnl|oryCun1|scaffold_211300 (169029-169212) | |
| 1-251, gnl|panTro1|chr14 (44964613-44964796) | |
| 1-251, gnl|panTro1|chr2 (155137366-155137630) | |
| 1-251, gnl|rheMac2|chr17 (24655243-24655426) | |
| 1-251, gnl|rheMac2|chr2 (137015634-137015370) | |
| 1-251, gnl|rn3|chr15 (56403302-56403119) | |
| 1-251, gnl|rn3|chr2 (147973426-147973690) | |
| 1-251, gnl|tetNig1|chr7 (9967212-9966948) | |
| 1-251, gnl|tetNig1|chrUn_random (98152601-98152784) | |
| 1-251, gnl|xenTro1|scaffold_340 (1228386-1228650) | |
| 1-251, gnl|xenTro1|scaffold_809 (168807-168624) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-251, gnl|bosTau2|chr1 (74059612-74059362) | |
| 1-251, gnl|canFam2|chr22 (8330331-8330148) | |
| 1-251, gnl|canFam2|chr23 (48420674-48420938) | |
| 1-251, gnl|danRer3|chr21 (36147636-36147372) | |
| 1-251, gnl|danRer3|chr21 (36147640-36147456) | |
| 1-251, gnl|dasNov1|scaffold_288102 (261-423) | |
| 1-251, gnl|dasNov1|scaffold_32076 (7010-6747) | |
| 1-251, gnl|echTel1|scaffold_176266 (7391-7208) | |
| 1-251, gnl|echTel1|scaffold_288047 (42165-42429) | |
| 1-251, gnl|fr1|chrUn (146824213-146823949) | |
| 1-251, gnl|fr1|chrUn (146824217-146824033) | |
| 1-251, gnl|galGal2|chr1 (160054003-160054186) | |
| 1-251, gnl|galGal2|chr9 (23057459-23057195) | |
| 1-251, gnl|hg17|chr13 (45255545-45255728) | |
| 1-251, gnl|hg17|chr3 (151942634-151942898) | |
| 1-251, gnl|Hg17|chr3 (151942883-151942633) | |
| 1-251, gnl|loxAfr1|scaffold_27073 (24058-24224) | |
| 1-251, gnl|loxAfr1|scaffold_53140 (13049-13312) | |
| 1-251, gnl|mm7|chr14 (70206440-70206257) | |
| 1-251, gnl|mm7|chr3 (58804666-58804930) | |
| 1-251, gnl|Mm7|chr3 (58804915-58804665) | |
| 1-251, gnl|monDom2|scaffold_28 (22503058-22503322) | |
| 1-251, gnl|monDom2|scaffold_64 (8431797-8431980) | |
| 1-251, gnl|oryCun1|scaffold_176028 (44304-44040) | |
| 1-251, gnl|oryCun1|scaffold_211300 (169029-169212) | |
| 1-251, gnl|panTro1|chr14 (44964613-44964796) | |
| 1-251, gnl|panTro1|chr2 (155137366-155137630) | |
| 1-251, gnl|rheMac2|chr17 (24655243-24655426) | |
| 1-251, gnl|rheMac2|chr2 (137015634-137015370) | |
| 1-251, gnl|rn3|chr15 (56403302-56403119) | |
| 1-251, gnl|rn3|chr2 (147973426-147973690) | |
| 1-251, gnl|tetNig1|chr7 (9967212-9966948) | |
| 1-251, gnl|tetNig1|chrUn_random (98152601-98152784) | |
| 1-251, gnl|xenTro1|scaffold_340 (1228386-1228650) | |
| 1-251, gnl|xenTro1|scaffold_809 (168807-168624) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| tes (0.207814) | |
| nlu (0.191681) | |
| eli (0.151814) | |
| fat (0.147427) | |
| sug (0.127291) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| nlu (0.191681) | |
| eli (0.151814) | |
| fat (0.147427) | |
| sug (0.127291) |