Ss1.1-Pig2-53M07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCCTGAGCATCAACGAGGAGATGCAGCGCATGCTGAACCAGCTGAGGGAGTATGATTT TGAGGACGACTGTGACAGCCTGACTTGGGAGGAGACGGAGGAGACCCTGCTGCTGTGGGA GGATTTCTCGGGCTATGCCCTGGCCGCCGCAGAGGCCCCGGGAGAGCAGCCGGAAGACAG TTTGGAGAAGGTGATTAAAGACACCGAGTCCCTGTTCAAAACCCGGGAGAAAGAATATCA GGAAACCATTGACCAGATAGAGCTGGAGTTGGCCACGGCCAAGAACGACATGAACCGGCA CCTGCACGAGTACATGGAGATGTGCAGCATGAAGCGGGGCCTGGACGTGCAGATGGAGAC CTGCCGCCGGCTTATCACCCAGTCTGGGGACCGAAAGTCTCCTGCTTTCACTGCGGTCCC GCTTAGCGACCCGCCGCCACCGCCAAGCGAGGCTGAGGACTCCGATCGCGATGTCTCATC TGACAGCTCCATGAGATAGGGACCTCGCGCAGCGGGGCCCTGCTGGGACTCACCGAGCCT GGCCCCTGGGACCGGGCGCTCCCCCGGCTTCCTCCCCTGGTCCTCGGCCTCTCTAGGGTC CTGGGGTGCCTGGAGTGAGGCTCAGCCCGCCCTTCCCGGGCGACTCCCTGCACAGCCGGC TGTCCTCCTTCATGCGTGGGTGTCCGCTACTTTCCCATCTTTAAAATGCTGCCAGAGTGC TCGCGACCCTCACCCCGTCCTCTGAGTAAGGAGTGTGATTGTCGGCTCTTCCTTCCACCC CGGTGGTCTTGAGCCAGCGGACCGTCCTGATTCTGTTCTGGTGCTCACTGGCCCAGGTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCCTGAGCATCAACGAGGAGATGCAGCGCATGCTGAACCAGCTGAGGGAGTATGATTT TGAGGACGACTGTGACAGCCTGACTTGGGAGGAGACGGAGGAGACCCTGCTGCTGTGGGA GGATTTCTCGGGCTATGCCCTGGCCGCCGCAGAGGCCCCGGGAGAGCAGCCGGAAGACAG TTTGGAGAAGGTGATTAAAGACACCGAGTCCCTGTTCAAAACCCGGGAGAAAGAATATCA GGAAACCATTGACCAGATAGAGCTGGAGTTGGCCACGGCCAAGAACGACATGAACCGGCA CCTGCACGAGTACATGGAGATGTGCAGCATGAAGCGGGGCCTGGACGTGCAGATGGAGAC CTGCCGCCGGCTTATCACCCAGTCTGGGGACCGAAAGTCTCCTGCTTTCACTGCGGTCCC GCTTAGCGACCCGCCGCCACCGCCAAGCGAGGCTGAGGACTCCGATCGCGATGTCTCATC TGACAGCTCCATGAGATAGGGACCTCGCGCAGCGGGGCCCTGCTGGGACTCACCGAGCCT GGCCCCTGGGACCGGGCGCTCCCCCGGCTTCCTCCCCTGGTCCTCGGCCTCTCTAGGGTC CTGGGGTGCCTGGAGTGAGGCTCAGCCCGCCCTTCCCGGGCGACTCCCTGCACAGCCGGC TGTCCTCCTTCATGCGTGGGTGTCCGCTACTTTCCCATCTTTAAAATGCTGCCAGAGTGC TCGCGACCCTCACCCCGTCCTCTGAGTAAGGAGTGTGATTGTCGGCTCTTCCTTCCACCC CGGTGGTCTTGAGCCAGCGGACCGTCCTGATTCTGTTCTGGTGCTCACTGGCCCAGGTGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 46-166, gnl|bosTau2|chr5 (60626423-60626543) | |
| 46-166, gnl|canFam2|chr27 (41490157-41490008) | |
| 46-166, gnl|danRer3|chr19 (13328969-13328834) | |
| 46-166, gnl|dasNov1|scaffold_27359 (19029-18880) | |
| 46-166, gnl|echTel1|scaffold_318999 (13215-13341) | |
| 46-166, gnl|fr1|chrUn (74854351-74854183) | |
| 46-166, gnl|galGal2|chr1 (71031006-71031156) | |
| 46-166, gnl|hg17|chr12 (6527849-6527999) | |
| 46-166, gnl|Hg17|chr12 (6527972-6527852) | |
| 46-166, gnl|loxAfr1|scaffold_43822 (20575-20425) | |
| 46-166, gnl|mm7|chr6 (125179023-125178873) | |
| 46-166, gnl|Mm7|chr6 (125178898-125179018) | |
| 46-166, gnl|monDom2|scaffold_31 (14949838-14950000) | |
| 46-166, gnl|oryCun1|scaffold_53614 (1156-1006) | |
| 46-166, gnl|panTro1|chr10 (7063265-7063415) | |
| 46-166, gnl|rheMac2|chr11 (6699864-6700014) | |
| 46-166, gnl|rn3|chr4 (161517350-161517200) | |
| 46-166, gnl|tetNig1|chr8 (8919299-8919177) | |
| 46-166, gnl|xenTro1|scaffold_991 (44591-44452) | |
| 261-377, gnl|bosTau2|chr2 (60833654-60833538) | |
| 261-377, gnl|canFam2|chr2 (82573526-82573376) | |
| 261-377, gnl|danRer3|chr3 (12957336-12957202) | |
| 261-377, gnl|dasNov1|scaffold_27359 (20288-20138) | |
| 261-377, gnl|echTel1|scaffold_318999 (12187-12336) | |
| 261-377, gnl|fr1|chrUn (31518343-31518209) | |
| 261-377, gnl|galGal2|chr21 (4375663-4375806) | |
| 261-377, gnl|hg17|chr1 (18982138-18982288) | |
| 261-377, gnl|Hg17|chr1 (18982274-18982158) | |
| 261-377, gnl|loxAfr1|scaffold_43822 (25324-25185) | |
| 261-377, gnl|mm7|chr4 (138993507-138993358) | |
| 261-377, gnl|Mm7|chr4 (138993370-138993486) | |
| 261-377, gnl|monDom2|scaffold_31 (14944416-14944565) | |
| 261-377, gnl|oryCun1|scaffold_199228 (81910-82049) | |
| 261-377, gnl|panTro1|chr1 (19205055-19205205) | |
| 261-377, gnl|rheMac2|chr1 (21557297-21557447) | |
| 261-377, gnl|rn3|chr5 (158427136-158426987) | |
| 261-377, gnl|tetNig1|chr11 (3882742-3882867) | |
| 261-377, gnl|xenTro1|scaffold_1107 (249469-249617) | |
| 531-837, gnl|bosTau2|chr5 (60630557-60630856) | |
| 531-837, gnl|Hg17|chr12 (6519812-6519502) | |
| 531-837, gnl|Mm7|chr6 (125186627-125186897) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 46-166, gnl|bosTau2|chr5 (60626423-60626543) | |
| 46-166, gnl|canFam2|chr27 (41490157-41490008) | |
| 46-166, gnl|danRer3|chr19 (13328969-13328834) | |
| 46-166, gnl|dasNov1|scaffold_27359 (19029-18880) | |
| 46-166, gnl|echTel1|scaffold_318999 (13215-13341) | |
| 46-166, gnl|fr1|chrUn (74854351-74854183) | |
| 46-166, gnl|galGal2|chr1 (71031006-71031156) | |
| 46-166, gnl|hg17|chr12 (6527849-6527999) | |
| 46-166, gnl|Hg17|chr12 (6527972-6527852) | |
| 46-166, gnl|loxAfr1|scaffold_43822 (20575-20425) | |
| 46-166, gnl|mm7|chr6 (125179023-125178873) | |
| 46-166, gnl|Mm7|chr6 (125178898-125179018) | |
| 46-166, gnl|monDom2|scaffold_31 (14949838-14950000) | |
| 46-166, gnl|oryCun1|scaffold_53614 (1156-1006) | |
| 46-166, gnl|panTro1|chr10 (7063265-7063415) | |
| 46-166, gnl|rheMac2|chr11 (6699864-6700014) | |
| 46-166, gnl|rn3|chr4 (161517350-161517200) | |
| 46-166, gnl|tetNig1|chr8 (8919299-8919177) | |
| 46-166, gnl|xenTro1|scaffold_991 (44591-44452) | |
| 261-377, gnl|bosTau2|chr2 (60833654-60833538) | |
| 261-377, gnl|canFam2|chr2 (82573526-82573376) | |
| 261-377, gnl|danRer3|chr3 (12957336-12957202) | |
| 261-377, gnl|dasNov1|scaffold_27359 (20288-20138) | |
| 261-377, gnl|echTel1|scaffold_318999 (12187-12336) | |
| 261-377, gnl|fr1|chrUn (31518343-31518209) | |
| 261-377, gnl|galGal2|chr21 (4375663-4375806) | |
| 261-377, gnl|hg17|chr1 (18982138-18982288) | |
| 261-377, gnl|Hg17|chr1 (18982274-18982158) | |
| 261-377, gnl|loxAfr1|scaffold_43822 (25324-25185) | |
| 261-377, gnl|mm7|chr4 (138993507-138993358) | |
| 261-377, gnl|Mm7|chr4 (138993370-138993486) | |
| 261-377, gnl|monDom2|scaffold_31 (14944416-14944565) | |
| 261-377, gnl|oryCun1|scaffold_199228 (81910-82049) | |
| 261-377, gnl|panTro1|chr1 (19205055-19205205) | |
| 261-377, gnl|rheMac2|chr1 (21557297-21557447) | |
| 261-377, gnl|rn3|chr5 (158427136-158426987) | |
| 261-377, gnl|tetNig1|chr11 (3882742-3882867) | |
| 261-377, gnl|xenTro1|scaffold_1107 (249469-249617) | |
| 531-837, gnl|bosTau2|chr5 (60630557-60630856) | |
| 531-837, gnl|Hg17|chr12 (6519812-6519502) | |
| 531-837, gnl|Mm7|chr6 (125186627-125186897) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.139256) | |
| ese (0.126502) | |
| cty (0.10408) |