Ss1.1-Pig2-53O19.5
|
AAGAAGTGGTGGGGGGATTGCTGCCCCTATTAGCCATATTTCGGCCCCTTCCCGCTCGCC
ACCCCCACCCCAGGTGCTGGGGCTCCTTTATTTTTATGCAATAACTGAGCTTGGGGGGTG
GGGCGGGTAAGGGGCCGGTTGAGCCAAGCCCCCTGCCCCGATGCCCATATCCTGCCCCAA
GAAGCTGGGTTGGTGGGGGCGATAATTTCCGCGCCCCTCTCCGCCCTATGGATGGGCATG
GGGGCGCTGGTGAGGTCCCCTGGACCATCCAGGGTGCTAGGGGTGGGAGAGGGGACNCCC
CCTCCCCGCCTTTACCTCACTTCCAATGCTGCCTTGATCTCTGTCTGGGGAGGGGGAGAG
AAGGGGCCCTAGCCCCTGCCCTCCGCCGTCTCAGAGCCATGCGATTAATTCCTGACTTAG
TTTATTTTTGCAAAACGTCGACCTCCTCCTCTCCCGCCCCGCATCCGCGAAGGCTTTTAA
TGGGAGGGGCGTCAAAGCTCAAAACTGTCTTCCTCTCTCCTCCCCCCTCTATCTGTAAAT
GTCACTTTGTGAGGGGAGGGGCGAGGGGAAGCCCTCCCCCTGCATGCTTCTGGCTGGAGC
ACCTCCCGGAGGAGTGGGGGAACCAGATGGTAGGCAGCCCCCAGGGCCGCTGGGGCTCAG
GGGTAAGGGGTGGGGCGGCAGGCGCACACTCGATGTACCTATAATAAATTCTTTGGCTTT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAGAAGTGGTGGGGGGATTGCTGCCCCTATTAGCCATATTTCGGCCCCTTCCCGCTCGCC
ACCCCCACCCCAGGTGCTGGGGCTCCTTTATTTTTATGCAATAACTGAGCTTGGGGGGTG
GGGCGGGTAAGGGGCCGGTTGAGCCAAGCCCCCTGCCCCGATGCCCATATCCTGCCCCAA
GAAGCTGGGTTGGTGGGGGCGATAATTTCCGCGCCCCTCTCCGCCCTATGGATGGGCATG
GGGGCGCTGGTGAGGTCCCCTGGACCATCCAGGGTGCTAGGGGTGGGAGAGGGGACNCCC
CCTCCCCGCCTTTACCTCACTTCCAATGCTGCCTTGATCTCTGTCTGGGGAGGGGGAGAG
AAGGGGCCCTAGCCCCTGCCCTCCGCCGTCTCAGAGCCATGCGATTAATTCCTGACTTAG
TTTATTTTTGCAAAACGTCGACCTCCTCCTCTCCCGCCCCGCATCCGCGAAGGCTTTTAA
TGGGAGGGGCGTCAAAGCTCAAAACTGTCTTCCTCTCTCCTCCCCCCTCTATCTGTAAAT
GTCACTTTGTGAGGGGAGGGGCGAGGGGAAGCCCTCCCCCTGCATGCTTCTGGCTGGAGC
ACCTCCCGGAGGAGTGGGGGAACCAGATGGTAGGCAGCCCCCAGGGCCGCTGGGGCTCAG
GGGTAAGGGGTGGGGCGGCAGGCGCACACTCGATGTACCTATAATAAATTCTTTGGCTTT |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
190-308, + strand, RNAmicro p=0.998218 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
190-308, + strand, RNAmicro p=0.998218 |
|
41-124, CJ444434 macaque brain cDNA library QccE Macaca fascicularis cDNA
(dbj|CJ444434.1|), blast E-value=9e-26, identity=94.19% |
|
41-283, AL532678 Homo sapiens ADULT BRAIN Homo sapiens cDNA clone
(emb|AL532678.3|), blast E-value=4e-31, identity=82.38% |
|
41-279, UI-M-BH1-anl-d-07-0-UI.r1 NIH_BMAP_M_S2 Mus musculus cDNA clone
(gb|BE864002.1|), blast E-value=0.000000000001, identity=92.31% |
|
59-283, 602723348T1 NIH_MGC_106 Homo sapiens cDNA clone IMAGE (gb|BG744975.1|),
blast E-value=2e-36, identity=86.15% |
|
171-159, BovGen_08282 normal cattle brain Bos taurus cDNA clone
(gb|CO879957.1|), blast E-value=6e-30, identity=91.07% |
|
41-283, LIB3550-033-P1-K1-F10 LIB3550 Canis familiaris cDNA clone
(gb|DN343559.1|), blast E-value=0, identity=91.43% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
41-124, CJ444434 macaque brain cDNA library QccE Macaca fascicularis cDNA
(dbj|CJ444434.1|), blast E-value=9e-26, identity=94.19% |
|
41-283, AL532678 Homo sapiens ADULT BRAIN Homo sapiens cDNA clone
(emb|AL532678.3|), blast E-value=4e-31, identity=82.38% |
|
41-279, UI-M-BH1-anl-d-07-0-UI.r1 NIH_BMAP_M_S2 Mus musculus cDNA clone
(gb|BE864002.1|), blast E-value=0.000000000001, identity=92.31% |
|
59-283, 602723348T1 NIH_MGC_106 Homo sapiens cDNA clone IMAGE (gb|BG744975.1|),
blast E-value=2e-36, identity=86.15% |
|
171-159, BovGen_08282 normal cattle brain Bos taurus cDNA clone
(gb|CO879957.1|), blast E-value=6e-30, identity=91.07% |
|
41-283, LIB3550-033-P1-K1-F10 LIB3550 Canis familiaris cDNA clone
(gb|DN343559.1|), blast E-value=0, identity=91.43% |
Human gene identifier and UTR site,
human gene reading direction
|
1-292, gnl|bosTau2|chr18 (41587235-41587509) |
|
1-292, gnl|canFam2|chr1 (116075822-116075503) |
|
1-292, gnl|echTel1|scaffold_294749 (7003-7323) |
|
1-292, gnl|hg17|chr19 (45773383-45773701) |
|
1-292, gnl|Hg17|chr19 (45773475-45773762) |
|
1-292, gnl|mm7|chr7 (24276072-24275760) |
|
1-292, gnl|Mm7|chr7 (24275996-24275696) |
|
1-292, gnl|monDom2|scaffold_149 (225252-225618) |
|
1-292, gnl|oryCun1|scaffold_162003 (529-844) |
|
1-292, gnl|panTro1|chr20 (42733943-42734261) |
|
1-292, gnl|rheMac2|chr19 (46947502-46947820) |
|
1-292, gnl|rn3|chr1 (82515574-82515259) |
| |
|
576-720, gnl|bosTau2|chr18 (41587562-41587719) |
|
576-720, gnl|Hg17|chr19 (45774046-45774203) |
|
576-720, gnl|Mm7|chr7 (24275405-24275249) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-292, gnl|bosTau2|chr18 (41587235-41587509) |
|
1-292, gnl|canFam2|chr1 (116075822-116075503) |
|
1-292, gnl|echTel1|scaffold_294749 (7003-7323) |
|
1-292, gnl|hg17|chr19 (45773383-45773701) |
|
1-292, gnl|Hg17|chr19 (45773475-45773762) |
|
1-292, gnl|mm7|chr7 (24276072-24275760) |
|
1-292, gnl|Mm7|chr7 (24275996-24275696) |
|
1-292, gnl|monDom2|scaffold_149 (225252-225618) |
|
1-292, gnl|oryCun1|scaffold_162003 (529-844) |
|
1-292, gnl|panTro1|chr20 (42733943-42734261) |
|
1-292, gnl|rheMac2|chr19 (46947502-46947820) |
|
1-292, gnl|rn3|chr1 (82515574-82515259) |
| |
|
576-720, gnl|bosTau2|chr18 (41587562-41587719) |
|
576-720, gnl|Hg17|chr19 (45774046-45774203) |
|
576-720, gnl|Mm7|chr7 (24275405-24275249) |
