Non-Coding RNA Search

Ss1.1-Pig2-54A07.5

Sequence:


               
               GGTCTCCAAACAGCATAAGGCTCATCTGAGGGCTTTGCTCGCTGTGATCACTTCCACTCC
ACTCATCGCTCATCAGCATCAGAAAGGCCTGGGACCAGTCTGAACCTGATGTTCCTCCTC
CCCTGTTTGAAGTGTGTTGCCCAGATGCAGTCTCCCTTTGGCCAAGGTCAACAGGTATTT
CCAGGGAACCCTTTGGATGGAGGCAAAGGAGCCAAGATGAATTGAGTTTACCTTGTTCTG
AAGGACAGACGTCTTTGCACCTTGCCCCTCATGCTCATACATTTTTAGCTCGGGCTTAAG
TGACCAAGTCTCCAGAACTGAGACCGAGAGCCAGGGGCTCGCACACCTGGGACCAGTCCC
CTGGGGACCTCACAGACTCAGACTAGACTGTTGTGATCCCACCAGAGCTCTGCTGCTGTC
CGCTTCCATCAGGACCACTCCGAAAAGCTAACAGCTCAGCCTTTCCACCATCACGTCATT
CCTTGGTGGCTGTTCTGCAGAATGAGGTGCTGTCACCAGTTTAGACAAGGCGCTTTATAT
TTGTAGAAAGGGTAGAAAATGGAACAGCCAGTGGGCTGAATACGCACATCCTTGGAGAGC
GAGCATGGCAGAAACAACTCCGAATGAGCTCAACAAAACTGGCGACTCCAGGGAATGGCG
TTTGTGTGGCAAGAGGGGTTGGTGGTGGTCCTTTAACCTCCTAGACCCTGGTACTGTGTC
ATGCAGCCAGGGTTTGGAATAATGCCACCCCTCCTGCAGTCCAGAGCCCCTCCAGGACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCTCCAAACAGCATAAGGCTCATCTGAGGGCTTTGCTCGCTGTGATCACTTCCACTCC
ACTCATCGCTCATCAGCATCAGAAAGGCCTGGGACCAGTCTGAACCTGATGTTCCTCCTC
CCCTGTTTGAAGTGTGTTGCCCAGATGCAGTCTCCCTTTGGCCAAGGTCAACAGGTATTT
CCAGGGAACCCTTTGGATGGAGGCAAAGGAGCCAAGATGAATTGAGTTTACCTTGTTCTG
AAGGACAGACGTCTTTGCACCTTGCCCCTCATGCTCATACATTTTTAGCTCGGGCTTAAG
TGACCAAGTCTCCAGAACTGAGACCGAGAGCCAGGGGCTCGCACACCTGGGACCAGTCCC
CTGGGGACCTCACAGACTCAGACTAGACTGTTGTGATCCCACCAGAGCTCTGCTGCTGTC
CGCTTCCATCAGGACCACTCCGAAAAGCTAACAGCTCAGCCTTTCCACCATCACGTCATT
CCTTGGTGGCTGTTCTGCAGAATGAGGTGCTGTCACCAGTTTAGACAAGGCGCTTTATAT
TTGTAGAAAGGGTAGAAAATGGAACAGCCAGTGGGCTGAATACGCACATCCTTGGAGAGC
GAGCATGGCAGAAACAACTCCGAATGAGCTCAACAAAACTGGCGACTCCAGGGAATGGCG
TTTGTGTGGCAAGAGGGGTTGGTGGTGGTCCTTTAACCTCCTAGACCCTGGTACTGTGTC
ATGCAGCCAGGGTTTGGAATAATGCCACCCCTCCTGCAGTCCAGAGCCCCTCCAGGACTA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               141-347, gnl|bosTau2|chr23 (8010950-8010744)
               

               
               141-347, gnl|Hg17|chr6 (34356801-34356584)
               


               
               364-746, gnl|bosTau2|chr23 (8010757-8010384)
               

               
               364-746, gnl|Hg17|chr6 (34356597-34356186)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               141-347, gnl|bosTau2|chr23 (8010950-8010744)
               

               
               141-347, gnl|Hg17|chr6 (34356801-34356584)
               


               
               364-746, gnl|bosTau2|chr23 (8010757-8010384)
               

               
               364-746, gnl|Hg17|chr6 (34356597-34356186)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               nep (0.183925)
               

               
               hlv (0.139256)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               hlv (0.139256)
               

               
               med (0.116252)

	141-347, gnl\|bosTau2\|chr23 (8010950-8010744)
	141-347, gnl\|Hg17\|chr6 (34356801-34356584)

	364-746, gnl\|bosTau2\|chr23 (8010757-8010384)
	364-746, gnl\|Hg17\|chr6 (34356597-34356186)