Ss1.1-Pig2-54N07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACATTTGCCAAGTGAGGTGAATGGTTATTTGGTTTTGTTTGTCAGTGGACAATGGTATCC ATTAATCTGGGCATAGTTAAGTTTCTTTTCAACCCTGCACCATGAAGGGTGTAGCTTGGG TTCGTCCCGCTCAGAAATGCCTTTTGATAAACATCCTTCTTGTTCCTGGGGGTAGTAACC AGTCAGTACTCCAGGGTCAAAGCCAGGTCAGCCCACTTCCAGAAAGAGCAACTGACCCCA GCACCAAATCTGCTGCTCATGGACAGGACATTGGGCTCGTCCTCGCAGCGAGACCCTCTC CCTGCTGGAGGGCTCGAGGGAGCTGGTAGAGTCTCACGGGGTGTGTCCTGTGACATTCCT CTGCTCTTATGGAGACTTGGGTCCAGGTTGAGTGTGAGTCAAATCAGGAAGTGGGTCCAC CCACCAGGAAGTGGGTCCAGTCTGCCGAAGCCTGGGTGGCAAGGGTCCAGAGCCCAGAAC GTGTCTCTCTCTGCCTCAGTGACCCACTTGGCAGACCGTGGGTCTGTGATGCACACAACC CAGCTCTGGGGTGAAAATAGAGGTTTACCAGTTGTTTCAAAACGGAAACCTATTTAACAG GGATGAAAAGCCAAAAGGGTTTGAAGCTAAAAGAGAAAGGTGTTATTAATGGAAATAAGG CTGTTATTTATTTTGTGAGTAAAATATAAATATTTACTGCTTTAAATCTTTTATTTCGTA CCCTCTACAGGTCAAACATTGTTCTCAGTGCTTTACAGACTCCATTCTGCTAGCTCATGG ACACTTCCAGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACATTTGCCAAGTGAGGTGAATGGTTATTTGGTTTTGTTTGTCAGTGGACAATGGTATCC ATTAATCTGGGCATAGTTAAGTTTCTTTTCAACCCTGCACCATGAAGGGTGTAGCTTGGG TTCGTCCCGCTCAGAAATGCCTTTTGATAAACATCCTTCTTGTTCCTGGGGGTAGTAACC AGTCAGTACTCCAGGGTCAAAGCCAGGTCAGCCCACTTCCAGAAAGAGCAACTGACCCCA GCACCAAATCTGCTGCTCATGGACAGGACATTGGGCTCGTCCTCGCAGCGAGACCCTCTC CCTGCTGGAGGGCTCGAGGGAGCTGGTAGAGTCTCACGGGGTGTGTCCTGTGACATTCCT CTGCTCTTATGGAGACTTGGGTCCAGGTTGAGTGTGAGTCAAATCAGGAAGTGGGTCCAC CCACCAGGAAGTGGGTCCAGTCTGCCGAAGCCTGGGTGGCAAGGGTCCAGAGCCCAGAAC GTGTCTCTCTCTGCCTCAGTGACCCACTTGGCAGACCGTGGGTCTGTGATGCACACAACC CAGCTCTGGGGTGAAAATAGAGGTTTACCAGTTGTTTCAAAACGGAAACCTATTTAACAG GGATGAAAAGCCAAAAGGGTTTGAAGCTAAAAGAGAAAGGTGTTATTAATGGAAATAAGG CTGTTATTTATTTTGTGAGTAAAATATAAATATTTACTGCTTTAAATCTTTTATTTCGTA CCCTCTACAGGTCAAACATTGTTCTCAGTGCTTTACAGACTCCATTCTGCTAGCTCATGG ACACTTCCAGGT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 411-516, + strand, RNAz p=0.56691 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 411-516, + strand, RNAz p=0.56691 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_003882, + |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 75-298, gnl|bosTau2|chr14 (3824011-3823794) | |
| 75-298, gnl|canFam2|chr13 (32716428-32717253) | |
| 75-298, gnl|dasNov1|scaffold_211435 (1215-417) | |
| 75-298, gnl|echTel1|scaffold_298042 (9688-8918) | |
| 75-298, gnl|hg17|chr8 (134309497-134310367) | |
| 75-298, gnl|Hg17|chr8 (134309742-134309956) | |
| 75-298, gnl|mm7|chr15 (67003499-67004372) | |
| 75-298, gnl|Mm7|chr15 (67003774-67003983) | |
| 75-298, gnl|oryCun1|scaffold_184492 (83677-82875) | |
| 75-298, gnl|panTro1|chr7 (137285566-137286436) | |
| 75-298, gnl|rheMac2|chr8 (135793018-135793888) | |
| 75-298, gnl|rn3|chr7 (104325620-104326483) | |
| 343-785, gnl|bosTau2|chr14 (3823712-3823263) | |
| 343-785, gnl|canFam2|chr13 (32716428-32717253) | |
| 343-785, gnl|dasNov1|scaffold_211435 (1215-417) | |
| 343-785, gnl|echTel1|scaffold_298042 (9688-8918) | |
| 343-785, gnl|hg17|chr8 (134309497-134310367) | |
| 343-785, gnl|Hg17|chr8 (134310039-134310525) | |
| 343-785, gnl|mm7|chr15 (67003499-67004372) | |
| 343-785, gnl|Mm7|chr15 (67004074-67004521) | |
| 343-785, gnl|oryCun1|scaffold_184492 (83677-82875) | |
| 343-785, gnl|panTro1|chr7 (137285566-137286436) | |
| 343-785, gnl|rheMac2|chr8 (135793018-135793888) | |
| 343-785, gnl|rn3|chr7 (104325620-104326483) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 75-298, gnl|bosTau2|chr14 (3824011-3823794) | |
| 75-298, gnl|canFam2|chr13 (32716428-32717253) | |
| 75-298, gnl|dasNov1|scaffold_211435 (1215-417) | |
| 75-298, gnl|echTel1|scaffold_298042 (9688-8918) | |
| 75-298, gnl|hg17|chr8 (134309497-134310367) | |
| 75-298, gnl|Hg17|chr8 (134309742-134309956) | |
| 75-298, gnl|mm7|chr15 (67003499-67004372) | |
| 75-298, gnl|Mm7|chr15 (67003774-67003983) | |
| 75-298, gnl|oryCun1|scaffold_184492 (83677-82875) | |
| 75-298, gnl|panTro1|chr7 (137285566-137286436) | |
| 75-298, gnl|rheMac2|chr8 (135793018-135793888) | |
| 75-298, gnl|rn3|chr7 (104325620-104326483) | |
| 343-785, gnl|bosTau2|chr14 (3823712-3823263) | |
| 343-785, gnl|canFam2|chr13 (32716428-32717253) | |
| 343-785, gnl|dasNov1|scaffold_211435 (1215-417) | |
| 343-785, gnl|echTel1|scaffold_298042 (9688-8918) | |
| 343-785, gnl|hg17|chr8 (134309497-134310367) | |
| 343-785, gnl|Hg17|chr8 (134310039-134310525) | |
| 343-785, gnl|mm7|chr15 (67003499-67004372) | |
| 343-785, gnl|Mm7|chr15 (67004074-67004521) | |
| 343-785, gnl|oryCun1|scaffold_184492 (83677-82875) | |
| 343-785, gnl|panTro1|chr7 (137285566-137286436) | |
| 343-785, gnl|rheMac2|chr8 (135793018-135793888) | |
| 343-785, gnl|rn3|chr7 (104325620-104326483) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| jej (0.0989218) | |
| eje (0.0988338) |