Non-Coding RNA Search

Ss1.1-Pig2-54P24.5

Sequence:


               
               TAATACTGAACTACTCCACCAGGATCGGGCATGGATTTGCTTTGAGCAAACACCCAGCCG
TGTGGGCTGATGCCTGGAGGAAGGACATCCCCTTAGAAGTCTGTCCCATCTCCAACCAGG
TGCTGAAGCTGGTGTCGGACCTGAGAAACCACCCTGCAGCCGTTCTGATGGCCACCGGGT
ACCCCATGGTTATCAGCTCAGATGACCCTGCTGCCTTTGGGGCCAAAGGCCTGTCCTACG
ATTTCTATGAGGCCTTCATGGGTCTCGGGGGGCTGACGGCTGACCTGAGGACACTCAAGC
AACTGGCCATGAACTCCATCAGGTACAGCGCCCTGTCAGAGACTGAGAAGAAGGTTGCCA
TGGAAACCTGGGAGGAGCGATGGCATAGGTTTGTAGCGGAGCTGGCCAGGGGCCCAAAGT
GAGCAGAACAGCAGCCCTGCCTCTGCCTCCCACCAGGCCGGCCTCACCTTCTCTCAGCTG
TCCTGGAGTCCAGTCCAGTCATCTCCGTTTCTTCATCAGAACCGGCCTGTGGGGTCACCC
CATGGCCTCCCTGTTGCCCGACCTTGGGAACACTCCATCAGTGGACACACACACATCCTT
CTCTCGGCCTCAGTGCAAGGGCCCTTGGGACTCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATACTGAACTACTCCACCAGGATCGGGCATGGATTTGCTTTGAGCAAACACCCAGCCG
TGTGGGCTGATGCCTGGAGGAAGGACATCCCCTTAGAAGTCTGTCCCATCTCCAACCAGG
TGCTGAAGCTGGTGTCGGACCTGAGAAACCACCCTGCAGCCGTTCTGATGGCCACCGGGT
ACCCCATGGTTATCAGCTCAGATGACCCTGCTGCCTTTGGGGCCAAAGGCCTGTCCTACG
ATTTCTATGAGGCCTTCATGGGTCTCGGGGGGCTGACGGCTGACCTGAGGACACTCAAGC
AACTGGCCATGAACTCCATCAGGTACAGCGCCCTGTCAGAGACTGAGAAGAAGGTTGCCA
TGGAAACCTGGGAGGAGCGATGGCATAGGTTTGTAGCGGAGCTGGCCAGGGGCCCAAAGT
GAGCAGAACAGCAGCCCTGCCTCTGCCTCCCACCAGGCCGGCCTCACCTTCTCTCAGCTG
TCCTGGAGTCCAGTCCAGTCATCTCCGTTTCTTCATCAGAACCGGCCTGTGGGGTCACCC
CATGGCCTCCCTGTTGCCCGACCTTGGGAACACTCCATCAGTGGACACACACACATCCTT
CTCTCGGCCTCAGTGCAAGGGCCCTTGGGACTCCTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61863838|ref|XP_607977.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61863838|ref|XP_607977.1|

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               112-324, gnl|bosTau2|chr5 (66246141-66245929)
               

               
               112-324, gnl|canFam2|chr27 (47918413-47918677)
               

               
               112-324, gnl|danRer3|chr4 (3080088-3080306)
               

               
               112-324, gnl|echTel1|scaffold_208926 (13935-14199)
               

               
               112-324, gnl|fr1|chrUn (96161954-96162218)
               

               
               112-324, gnl|galGal2|chr1 (58312658-58312888)
               

               
               112-324, gnl|hg17|chr22 (16037260-16037524)
               

               
               112-324, gnl|Hg17|chr22 (16037487-16037262)
               

               
               112-324, gnl|loxAfr1|scaffold_18810 (29357-29620)
               

               
               112-324, gnl|monDom2|scaffold_31 (27147658-27147923)
               

               
               112-324, gnl|panTro1|chr23 (15897887-15898150)
               

               
               112-324, gnl|rheMac2|chr10 (61823286-61823550)
               

               
               112-324, gnl|tetNig1|chr13 (1613365-1613600)
               

               
               112-324, gnl|xenTro1|scaffold_286 (220203-219962)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               112-324, gnl|bosTau2|chr5 (66246141-66245929)
               

               
               112-324, gnl|canFam2|chr27 (47918413-47918677)
               

               
               112-324, gnl|danRer3|chr4 (3080088-3080306)
               

               
               112-324, gnl|echTel1|scaffold_208926 (13935-14199)
               

               
               112-324, gnl|fr1|chrUn (96161954-96162218)
               

               
               112-324, gnl|galGal2|chr1 (58312658-58312888)
               

               
               112-324, gnl|hg17|chr22 (16037260-16037524)
               

               
               112-324, gnl|Hg17|chr22 (16037487-16037262)
               

               
               112-324, gnl|loxAfr1|scaffold_18810 (29357-29620)
               

               
               112-324, gnl|monDom2|scaffold_31 (27147658-27147923)
               

               
               112-324, gnl|panTro1|chr23 (15897887-15898150)
               

               
               112-324, gnl|rheMac2|chr10 (61823286-61823550)
               

               
               112-324, gnl|tetNig1|chr13 (1613365-1613600)
               

               
               112-324, gnl|xenTro1|scaffold_286 (220203-219962)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               csp (0.161186)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)

	112-324, gnl\|bosTau2\|chr5 (66246141-66245929)
	112-324, gnl\|canFam2\|chr27 (47918413-47918677)
	112-324, gnl\|danRer3\|chr4 (3080088-3080306)
	112-324, gnl\|echTel1\|scaffold_208926 (13935-14199)
	112-324, gnl\|fr1\|chrUn (96161954-96162218)
	112-324, gnl\|galGal2\|chr1 (58312658-58312888)
	112-324, gnl\|hg17\|chr22 (16037260-16037524)
	112-324, gnl\|Hg17\|chr22 (16037487-16037262)
	112-324, gnl\|loxAfr1\|scaffold_18810 (29357-29620)
	112-324, gnl\|monDom2\|scaffold_31 (27147658-27147923)
	112-324, gnl\|panTro1\|chr23 (15897887-15898150)
	112-324, gnl\|rheMac2\|chr10 (61823286-61823550)
	112-324, gnl\|tetNig1\|chr13 (1613365-1613600)
	112-324, gnl\|xenTro1\|scaffold_286 (220203-219962)