Non-Coding RNA Search

Ss1.1-Pig2-55N13.5

Sequence:


               
               ATCTCAGCCTACATGAGGTCCAGCCGCTTCCTGCCACACCCCGTGTATACAAAGATGGCC
ATGTGGGGCAACAAGTAGTGCCCTGAAGCAGGAGATGGAGTGAGGAGCAGGCCCTGGAGG
ACAGCTGGCCCTCCCTGCAGCCCACGACCAGACGTCTTGCTTGTCCTCCTTGTTCCCATC
AGGCCTCACGTGGCCCCTAAGCCTTTCCCAGGCCGCATTCACCAGGATCTTGAGCGCTCT
GCAGCCTCCCGCCCTTCTGCCGTGAAGTCAGCAGCTGAAGGTATGCTTTCTGCTCTGAGG
CCAACCAGACCCGCCTTCCTTTCTGTGCTTGCTCCTGCTGTGAGCAGCCTGACCTGGAGA
GCTCAGGCCTGACATGTGGAGCCTGGCCGTTGCCTGTGGGGCTCAGTCCTGAGCTGCCCA
GCCCTGCCCTGAAGACCAGCCCTGACCCAGCGTGTAGGCCCTGCTCCCCCAGCGTGGTCC
CCACCCAGCCCTGCCTGATCAGCAGTAAAGCCTCACTCACAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTCAGCCTACATGAGGTCCAGCCGCTTCCTGCCACACCCCGTGTATACAAAGATGGCC
ATGTGGGGCAACAAGTAGTGCCCTGAAGCAGGAGATGGAGTGAGGAGCAGGCCCTGGAGG
ACAGCTGGCCCTCCCTGCAGCCCACGACCAGACGTCTTGCTTGTCCTCCTTGTTCCCATC
AGGCCTCACGTGGCCCCTAAGCCTTTCCCAGGCCGCATTCACCAGGATCTTGAGCGCTCT
GCAGCCTCCCGCCCTTCTGCCGTGAAGTCAGCAGCTGAAGGTATGCTTTCTGCTCTGAGG
CCAACCAGACCCGCCTTCCTTTCTGTGCTTGCTCCTGCTGTGAGCAGCCTGACCTGGAGA
GCTCAGGCCTGACATGTGGAGCCTGGCCGTTGCCTGTGGGGCTCAGTCCTGAGCTGCCCA
GCCCTGCCCTGAAGACCAGCCCTGACCCAGCGTGTAGGCCCTGCTCCCCCAGCGTGGTCC
CCACCCAGCCCTGCCTGATCAGCAGTAAAGCCTCACTCACAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               334-485, - strand, RNAz p=0.70266
               

               
               358-471, - strand, RNAz p=0.799915

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               334-485, - strand, RNAz p=0.70266
               

               
               358-471, - strand, RNAz p=0.799915

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-521, gnl|bosTau2|chr3 (25773953-25773420)
               

               
               1-521, gnl|canFam2|chr6 (45262450-45262798)
               

               
               1-521, gnl|echTel1|scaffold_285412 (49687-49445)
               

               
               1-521, gnl|Hg17|chr1 (109915841-109916364)
               

               
               1-521, gnl|hg17|chr3 (12273875-12274196)
               

               
               1-521, gnl|loxAfr1|scaffold_51523 (1141-1472)
               

               
               1-521, gnl|mm7|chr5 (115862084-115862402)
               

               
               1-521, gnl|oryCun1|scaffold_147771 (5786-6115)
               

               
               1-521, gnl|panTro1|chr2 (12725090-12725412)
               

               
               1-521, gnl|rheMac2|chr2 (48806306-48805986)
               

               
               1-521, gnl|rn3|chr2 (203538200-203538482)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-521, gnl|bosTau2|chr3 (25773953-25773420)
               

               
               1-521, gnl|canFam2|chr6 (45262450-45262798)
               

               
               1-521, gnl|echTel1|scaffold_285412 (49687-49445)
               

               
               1-521, gnl|Hg17|chr1 (109915841-109916364)
               

               
               1-521, gnl|hg17|chr3 (12273875-12274196)
               

               
               1-521, gnl|loxAfr1|scaffold_51523 (1141-1472)
               

               
               1-521, gnl|mm7|chr5 (115862084-115862402)
               

               
               1-521, gnl|oryCun1|scaffold_147771 (5786-6115)
               

               
               1-521, gnl|panTro1|chr2 (12725090-12725412)
               

               
               1-521, gnl|rheMac2|chr2 (48806306-48805986)
               

               
               1-521, gnl|rn3|chr2 (203538200-203538482)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cli (0.458435)
               

               
               fbs (0.175346)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.458435)
               

               
               fbs (0.175346)
               

               
               ebs (0.118301)

	334-485, - strand, RNAz p=0.70266
	358-471, - strand, RNAz p=0.799915

	1-521, gnl\|bosTau2\|chr3 (25773953-25773420)
	1-521, gnl\|canFam2\|chr6 (45262450-45262798)
	1-521, gnl\|echTel1\|scaffold_285412 (49687-49445)
	1-521, gnl\|Hg17\|chr1 (109915841-109916364)
	1-521, gnl\|hg17\|chr3 (12273875-12274196)
	1-521, gnl\|loxAfr1\|scaffold_51523 (1141-1472)
	1-521, gnl\|mm7\|chr5 (115862084-115862402)
	1-521, gnl\|oryCun1\|scaffold_147771 (5786-6115)
	1-521, gnl\|panTro1\|chr2 (12725090-12725412)
	1-521, gnl\|rheMac2\|chr2 (48806306-48805986)
	1-521, gnl\|rn3\|chr2 (203538200-203538482)