Non-Coding RNA Search

Ss1.1-Pig2-56G03.5

Sequence:


               
               TGTGTCTCTCTCCAGGGAGCATGATCGAGCGGATCCTGGTGTCGTGCAGTAACCAGCAGG
ACCTGCACGAGTGGGTGGACCATCTGCAGAAGCAGACGAAGGTCACGTCCGCGGGGAACC
CCACCATTAAGCCTCACTCCGTGCCTGGTCCTGGGTGTCCATGGGCCCTGTGGGCCCCGT
CCCACAGCGTGGAGCTCAGACTCCCCTGCCTGGTGGCGCTTCCGCGGCTCGGCCCCGACC
TGCCCGCAGTCGACCGTGTAACCAGGACGGCGGCTTCCTGCCTTGGCGCTGTCCTCGTCG
CCGCGGGGGCTGGAAAGCGTCGGCCTCTCCCCCTTTCCCGAGCCCTTTGTTGCCGCGGTG
GTTTCAGGGACATGCGAGAGCCTGCAGGGGAGCAGGTGGATTAACTCAGGAAGCACGTTC
GTCACCTGATTGCCCCACACTGACGGGCAGCGTTGCCACCAGCGTCCCGGGACGGGGCTT
CTCCAGACCTGCCTTAACCGTTGATTCTCGCATCAAGGGAGACGGTGGGGGTTTTTACTG
CCCCTCCCCCGGAGGGTGAGCTGCGAGTCGCTTGCATAACGTGTTACTTTTTTCCCCGAG
GATCCAGGGCTTGACTGAGCTTTTTAGGGCGCAGAGAAGATGGACCTTCTAGAAACCTGC
CCGTTGTAAACAGACTGCGTCTGTGTCTCGGCACCTTCTGGGGCCTGGGGGTGGCCGGGC
CACTCTGCCGCCCAAGGCACCTCTGCTCCCGCCTTGCGTGGATGTGGAGACAAAGCCATT
TCCTCGCCAGGGATGCGCGGCCTCTGTCGTGCGCACCCCCTGCCCCCAGCCTGTGGGCTC
CTGATGCCTCTGCGTCCTCCGTCCTCGGGGACACGCAGGGCCCCCGTTTACAGCTGTGGG
GACACTTCCCGACACACGCAGTTGGTGGCCTGGCACTGACCACTCATGCTCCATGGTTGT
AATTATTAAACTATTTTTCTTATGGTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGTCTCTCTCCAGGGAGCATGATCGAGCGGATCCTGGTGTCGTGCAGTAACCAGCAGG
ACCTGCACGAGTGGGTGGACCATCTGCAGAAGCAGACGAAGGTCACGTCCGCGGGGAACC
CCACCATTAAGCCTCACTCCGTGCCTGGTCCTGGGTGTCCATGGGCCCTGTGGGCCCCGT
CCCACAGCGTGGAGCTCAGACTCCCCTGCCTGGTGGCGCTTCCGCGGCTCGGCCCCGACC
TGCCCGCAGTCGACCGTGTAACCAGGACGGCGGCTTCCTGCCTTGGCGCTGTCCTCGTCG
CCGCGGGGGCTGGAAAGCGTCGGCCTCTCCCCCTTTCCCGAGCCCTTTGTTGCCGCGGTG
GTTTCAGGGACATGCGAGAGCCTGCAGGGGAGCAGGTGGATTAACTCAGGAAGCACGTTC
GTCACCTGATTGCCCCACACTGACGGGCAGCGTTGCCACCAGCGTCCCGGGACGGGGCTT
CTCCAGACCTGCCTTAACCGTTGATTCTCGCATCAAGGGAGACGGTGGGGGTTTTTACTG
CCCCTCCCCCGGAGGGTGAGCTGCGAGTCGCTTGCATAACGTGTTACTTTTTTCCCCGAG
GATCCAGGGCTTGACTGAGCTTTTTAGGGCGCAGAGAAGATGGACCTTCTAGAAACCTGC
CCGTTGTAAACAGACTGCGTCTGTGTCTCGGCACCTTCTGGGGCCTGGGGGTGGCCGGGC
CACTCTGCCGCCCAAGGCACCTCTGCTCCCGCCTTGCGTGGATGTGGAGACAAAGCCATT
TCCTCGCCAGGGATGCGCGGCCTCTGTCGTGCGCACCCCCTGCCCCCAGCCTGTGGGCTC
CTGATGCCTCTGCGTCCTCCGTCCTCGGGGACACGCAGGGCCCCCGTTTACAGCTGTGGG
GACACTTCCCGACACACGCAGTTGGTGGCCTGGCACTGACCACTCATGCTCCATGGTTGT
AATTATTAAACTATTTTTCTTATGGTAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               25-144, - strand, RNAz p=0.909226

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               25-144, - strand, RNAz p=0.909226

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-144, gnl|bosTau2|chr24 (6348682-6348551)
               

               
               13-144, gnl|Hg17|chr13 (110730696-110731014)
               

               
               13-144, gnl|Mm7|chr8 (11783310-11783580)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-144, gnl|bosTau2|chr24 (6348682-6348551)
               

               
               13-144, gnl|Hg17|chr13 (110730696-110731014)
               

               
               13-144, gnl|Mm7|chr8 (11783310-11783580)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fhi (0.169578)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	13-144, gnl\|bosTau2\|chr24 (6348682-6348551)
	13-144, gnl\|Hg17\|chr13 (110730696-110731014)
	13-144, gnl\|Mm7\|chr8 (11783310-11783580)

	fhi (0.169578)
	eru (0.120048)
	med (0.116252)
	ecc (0.115035)
	jej (0.0989218)