Non-Coding RNA Search

Ss1.1-Pig2-57D19.5

Sequence:


               
               GCCATGGAGACCATCCTCTCACCCAGCTGTCCTGGGAATGATCCAACTTTCGGTTCTCCA
GCTCTCACCATGGAAACAGGCTGCTCCTTTCTGCAGGGCACCCCAGCTTCTTGCCGCCCT
CCAAGCTCTGCCCTCAGGTGGTTTGGACCCCACAGCTGTAGCCATGGAGACCAAACTCTG
GTGTCTGAGGTAATACAACACCTGTCCCCGCAAGGCTTTCCCTTCTTGGTAGGGCACACC
CCTCCAAACTGTCACTATAGGGACTGTCAACGTCATTCCCATGACAACTGACTTTCCAGT
TCTCAGGAACTTCTTGCCATGGGCCAGAACTGTGTCCCTGCACCAAATGGGCTGCCCCTG
CACCAAACGGGCTGCCCCTGCACCAAATGAGCTGCCCCTTCACCAAATGGACCCACCTCC
AAGCAGTATCCCAGACCTGGCTGGATTACTTTAGCTGCTGGACACCCTTCATTTGCACGC
TAATTATATTCCAGACAACAGCTGTGCACGAGACCCCTTGCAACACTCAGATGAGCAAAC
TGAGGCTCTGGCGTGCCCCTACCCTTTGTGCTGTGCAAGCACGGGGCTCACTCTCTCTCT
GAGACCACATCTCCATTCTCACTGAGCCCCTCCCTCCTTTCCTAACCTCTTTCCCATAAC
ATTTCCCTTCTTAGAGATCCAGGAGAGATGGAATTGTCTTTAAACCTCAAAATCCCCTCT
GAGTTCCAGGTTCTAAGGGGTGATTCCTGCTAAGAAGTCAAGACTCAAACTCTCCAGTGT
TAAGAGGCAGTGTCAAGGGACACTGTCCATGAGCAAGGCCACCCCAGCTTTTGGATACTC
TAGATCGAGGTCTTGCCTGGAATACCACTGGGGTTCCTCCTGGAGCCCTCCTTACTGTCA
CATCCATCTCCAGGAAACCCATCTGAGGGTTTTGGGACTGGGTGTTCCTGGGTTCGAATC
TTGCCTCTGTGACCAAGTGACAAAACCCCTGATCCTTTTTCCTTCTCTGTACTAGGGCTG
TTCTAAGGTCCCAGTGAGTGCAAAGTGTACAGCAGGGGCTCAATAAATCTTTTTTTTTTT
TTGGGGGGAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCATGGAGACCATCCTCTCACCCAGCTGTCCTGGGAATGATCCAACTTTCGGTTCTCCA
GCTCTCACCATGGAAACAGGCTGCTCCTTTCTGCAGGGCACCCCAGCTTCTTGCCGCCCT
CCAAGCTCTGCCCTCAGGTGGTTTGGACCCCACAGCTGTAGCCATGGAGACCAAACTCTG
GTGTCTGAGGTAATACAACACCTGTCCCCGCAAGGCTTTCCCTTCTTGGTAGGGCACACC
CCTCCAAACTGTCACTATAGGGACTGTCAACGTCATTCCCATGACAACTGACTTTCCAGT
TCTCAGGAACTTCTTGCCATGGGCCAGAACTGTGTCCCTGCACCAAATGGGCTGCCCCTG
CACCAAACGGGCTGCCCCTGCACCAAATGAGCTGCCCCTTCACCAAATGGACCCACCTCC
AAGCAGTATCCCAGACCTGGCTGGATTACTTTAGCTGCTGGACACCCTTCATTTGCACGC
TAATTATATTCCAGACAACAGCTGTGCACGAGACCCCTTGCAACACTCAGATGAGCAAAC
TGAGGCTCTGGCGTGCCCCTACCCTTTGTGCTGTGCAAGCACGGGGCTCACTCTCTCTCT
GAGACCACATCTCCATTCTCACTGAGCCCCTCCCTCCTTTCCTAACCTCTTTCCCATAAC
ATTTCCCTTCTTAGAGATCCAGGAGAGATGGAATTGTCTTTAAACCTCAAAATCCCCTCT
GAGTTCCAGGTTCTAAGGGGTGATTCCTGCTAAGAAGTCAAGACTCAAACTCTCCAGTGT
TAAGAGGCAGTGTCAAGGGACACTGTCCATGAGCAAGGCCACCCCAGCTTTTGGATACTC
TAGATCGAGGTCTTGCCTGGAATACCACTGGGGTTCCTCCTGGAGCCCTCCTTACTGTCA
CATCCATCTCCAGGAAACCCATCTGAGGGTTTTGGGACTGGGTGTTCCTGGGTTCGAATC
TTGCCTCTGTGACCAAGTGACAAAACCCCTGATCCTTTTTCCTTCTCTGTACTAGGGCTG
TTCTAAGGTCCCAGTGAGTGCAAAGTGTACAGCAGGGGCTCAATAAATCTTTTTTTTTTT
TTGGGGGGAGGG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               16-363, - strand, RNAz p=0.990122
               

               
               197-313, - strand, RNAz p=0.517755
               

               
               565-876, - strand, RNAz p=0.998925

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               16-363, - strand, RNAz p=0.990122
               

               
               197-313, - strand, RNAz p=0.517755
               

               
               565-876, - strand, RNAz p=0.998925

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               595-740, 1271863 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN527045.1|), 
blast E-value=1e-22, identity=84.93% 
               

               
               595-740, 1317651 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN529039.1|), 
blast E-value=4e-25, identity=85.62% 
               

               
               595-740, 1319187 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN530457.1|), 
blast E-value=4e-25, identity=85.62% 
               

               
               595-740, 1429640 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DR113301.1|), 
blast E-value=1e-22, identity=84.93% 
               

               
               595-740, 1430291 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DR114659.1|), 
blast E-value=1e-22, identity=84.93% 
               

               
               595-740, LB0272.CR_D16 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV887470.1|), 
blast E-value=1e-22, identity=84.93%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               595-740, 1271863 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN527045.1|), 
blast E-value=1e-22, identity=84.93% 
               

               
               595-740, 1317651 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN529039.1|), 
blast E-value=4e-25, identity=85.62% 
               

               
               595-740, 1319187 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN530457.1|), 
blast E-value=4e-25, identity=85.62% 
               

               
               595-740, 1429640 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DR113301.1|), 
blast E-value=1e-22, identity=84.93% 
               

               
               595-740, 1430291 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DR114659.1|), 
blast E-value=1e-22, identity=84.93% 
               

               
               595-740, LB0272.CR_D16 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV887470.1|), 
blast E-value=1e-22, identity=84.93%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_023002, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_023002, -

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-372, gnl|bosTau2|chr7 (2675339-2674971)
               

               
               1-372, gnl|canFam2|chr20 (46942806-46942057)
               

               
               1-372, gnl|echTel1|scaffold_136888 (771-7)
               

               
               1-372, gnl|hg17|chr19 (19228063-19228837)
               

               
               1-372, gnl|Hg17|chr19 (19228545-19228139)
               

               
               1-372, gnl|mm7|chr8 (68545251-68544525)
               

               
               1-372, gnl|Mm7|chr8 (68544778-68545163)
               

               
               1-372, gnl|panTro1|chr20 (20304742-20305516)
               

               
               1-372, gnl|rheMac2|chr19 (18908032-18908803)
               

               
               1-372, gnl|rn3|chr16 (19817142-19817875)
               


               
               430-1082, gnl|bosTau2|chr7 (2674971-2674311)
               

               
               430-1082, gnl|Hg17|chr19 (19228138-19227475)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-372, gnl|bosTau2|chr7 (2675339-2674971)
               

               
               1-372, gnl|canFam2|chr20 (46942806-46942057)
               

               
               1-372, gnl|echTel1|scaffold_136888 (771-7)
               

               
               1-372, gnl|hg17|chr19 (19228063-19228837)
               

               
               1-372, gnl|Hg17|chr19 (19228545-19228139)
               

               
               1-372, gnl|mm7|chr8 (68545251-68544525)
               

               
               1-372, gnl|Mm7|chr8 (68544778-68545163)
               

               
               1-372, gnl|panTro1|chr20 (20304742-20305516)
               

               
               1-372, gnl|rheMac2|chr19 (18908032-18908803)
               

               
               1-372, gnl|rn3|chr16 (19817142-19817875)
               


               
               430-1082, gnl|bosTau2|chr7 (2674971-2674311)
               

               
               430-1082, gnl|Hg17|chr19 (19228138-19227475)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fhi (0.339155)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               jej (0.0989218)

	16-363, - strand, RNAz p=0.990122
	197-313, - strand, RNAz p=0.517755
	565-876, - strand, RNAz p=0.998925

	595-740, 1271863 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN527045.1\|), blast E-value=1e-22, identity=84.93%
	595-740, 1317651 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN529039.1\|), blast E-value=4e-25, identity=85.62%
	595-740, 1319187 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN530457.1\|), blast E-value=4e-25, identity=85.62%
	595-740, 1429640 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DR113301.1\|), blast E-value=1e-22, identity=84.93%
	595-740, 1430291 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DR114659.1\|), blast E-value=1e-22, identity=84.93%
	595-740, LB0272.CR_D16 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|DV887470.1\|), blast E-value=1e-22, identity=84.93%

	1-372, gnl\|bosTau2\|chr7 (2675339-2674971)
	1-372, gnl\|canFam2\|chr20 (46942806-46942057)
	1-372, gnl\|echTel1\|scaffold_136888 (771-7)
	1-372, gnl\|hg17\|chr19 (19228063-19228837)
	1-372, gnl\|Hg17\|chr19 (19228545-19228139)
	1-372, gnl\|mm7\|chr8 (68545251-68544525)
	1-372, gnl\|Mm7\|chr8 (68544778-68545163)
	1-372, gnl\|panTro1\|chr20 (20304742-20305516)
	1-372, gnl\|rheMac2\|chr19 (18908032-18908803)
	1-372, gnl\|rn3\|chr16 (19817142-19817875)

	430-1082, gnl\|bosTau2\|chr7 (2674971-2674311)
	430-1082, gnl\|Hg17\|chr19 (19228138-19227475)