Non-Coding RNA Search

Ss1.1-Pig2-57J02.5

Sequence:


               
               TTGACCAGCAAGACCTCCGCTACCTCCGGGCCCAGCTGCAAAGAAAACTCCACCTGCTCT
CCCGGCCCCAGGATGGGGAGGCCGAGTGAGAAGCTAACCCTGGTTCCAAGCCCTACACTT
CCTCTTCCTCCAATTCCAAACCCCTTCTCATCCAGGACCTGTCTGCTTCAGACCAGAGAC
CCAAATCCAAGGACTGAAGGACCTGTCCCTTCCCCTGCTTAAGCCTCTCCTTCTTGGGTC
CAGCTCTAGACCCTAAATTGAGTTTCAGCTACTGGACGCCAAGGTCCACTTCTCACCAGC
CAGGAAGAGGGAGTGGGAAACTTTATCTTTCTCCTCATAGTTTAGGGCTTGACCCTCCGT
TTACAACCTCCTTACAAGGAGAAGGGCCTGGCCTGACCAATCCCCTGGCCCTGTTACTCG
CCTCTGCGCCTCAGGGATTCTCTTCCCACATCTTGCTCCACCTCCTAGAAGCTGGACCAA
GGTCTGCAAGTTTGACAATAGAGGCTGCCCCCCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGACCAGCAAGACCTCCGCTACCTCCGGGCCCAGCTGCAAAGAAAACTCCACCTGCTCT
CCCGGCCCCAGGATGGGGAGGCCGAGTGAGAAGCTAACCCTGGTTCCAAGCCCTACACTT
CCTCTTCCTCCAATTCCAAACCCCTTCTCATCCAGGACCTGTCTGCTTCAGACCAGAGAC
CCAAATCCAAGGACTGAAGGACCTGTCCCTTCCCCTGCTTAAGCCTCTCCTTCTTGGGTC
CAGCTCTAGACCCTAAATTGAGTTTCAGCTACTGGACGCCAAGGTCCACTTCTCACCAGC
CAGGAAGAGGGAGTGGGAAACTTTATCTTTCTCCTCATAGTTTAGGGCTTGACCCTCCGT
TTACAACCTCCTTACAAGGAGAAGGGCCTGGCCTGACCAATCCCCTGGCCCTGTTACTCG
CCTCTGCGCCTCAGGGATTCTCTTCCCACATCTTGCTCCACCTCCTAGAAGCTGGACCAA
GGTCTGCAAGTTTGACAATAGAGGCTGCCCCCCACC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               159-311, - strand, RNAz p=0.857448

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-311, - strand, RNAz p=0.857448

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-482, gnl|bosTau2|chr23 (20824687-20825159)
               

               
               3-482, gnl|Hg17|chr6 (30764503-30764018)
               

               
               3-482, gnl|Mm7|chr17 (33967701-33968187)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-482, gnl|bosTau2|chr23 (20824687-20825159)
               

               
               3-482, gnl|Hg17|chr6 (30764503-30764018)
               

               
               3-482, gnl|Mm7|chr17 (33967701-33968187)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ill (0.175593)
               

               
               ton (0.1755)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)

	3-482, gnl\|bosTau2\|chr23 (20824687-20825159)
	3-482, gnl\|Hg17\|chr6 (30764503-30764018)
	3-482, gnl\|Mm7\|chr17 (33967701-33968187)