Non-Coding RNA Search

Ss1.1-Pig2-58C10.5

Sequence:


               
               GCAAAGGCACGTGGGGCCACCAAGGCCGGGGGCCCCAGCTCCTGCAGTGGCTCAAGGAGC
CCCTTATCAGGCTCAAGGCGGAAAACCTGGCTGAAGGCGAAGTCGCTGCCCAGGATAGCC
AGCTGATCCTTGGCGATGAGCAGTGGCTGAAAGACGTGGGCACCACGTGAGGGAAGCTGC
TGTAGCAGGCGAAACATGGAGCCATCCCAGCGCATGACCATGGAGTCCCCGATGTAGCGT
GTCAGGCACAGGAACACATCCCCGCCGGCCTGGAAGTGGTGGGTGGCGTAGACGTCCTCG
GCCTCTGGGATGTCCGTGCGCCTCTCGAAGCGGCCCCCAAACCAGTGGAAGAGCACCGGC
CGCTGCGAGGCCGAGGCCAGCAGCAGATGGGGCCGGCCGTCCAGCTCCAGGGCCTCGGCG
TCCGTGTCCCGGTGCCAGGCGTGCAGGCTCTGGCGCGGGTAGAAGCCCGGCCCGTCCCGG
CACAGCAGCGTGGTGCTTCCCGCCTTGGAGGCGTCGGCCACCACAAAGCAGGGCTGCCCG
TCCAGCCACAGGAGCTCGGCATCATTGGGCCGCAGCAGCCGGCGCGGAGCCAGGGCCTGC
ATCGGGGCCAGGCGCAGGTCGGGGCCGGGCCGGGCCCACAGCTGCGAGCCTCCCCACAGG
CGGGCGGCCAGCATGAAGAGGCGCGGGCCCAGCACCAGCGGCTTGCAGGACACCACGGAG
GGCGCAGACAGCTCTTCCTCCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAAGGCACGTGGGGCCACCAAGGCCGGGGGCCCCAGCTCCTGCAGTGGCTCAAGGAGC
CCCTTATCAGGCTCAAGGCGGAAAACCTGGCTGAAGGCGAAGTCGCTGCCCAGGATAGCC
AGCTGATCCTTGGCGATGAGCAGTGGCTGAAAGACGTGGGCACCACGTGAGGGAAGCTGC
TGTAGCAGGCGAAACATGGAGCCATCCCAGCGCATGACCATGGAGTCCCCGATGTAGCGT
GTCAGGCACAGGAACACATCCCCGCCGGCCTGGAAGTGGTGGGTGGCGTAGACGTCCTCG
GCCTCTGGGATGTCCGTGCGCCTCTCGAAGCGGCCCCCAAACCAGTGGAAGAGCACCGGC
CGCTGCGAGGCCGAGGCCAGCAGCAGATGGGGCCGGCCGTCCAGCTCCAGGGCCTCGGCG
TCCGTGTCCCGGTGCCAGGCGTGCAGGCTCTGGCGCGGGTAGAAGCCCGGCCCGTCCCGG
CACAGCAGCGTGGTGCTTCCCGCCTTGGAGGCGTCGGCCACCACAAAGCAGGGCTGCCCG
TCCAGCCACAGGAGCTCGGCATCATTGGGCCGCAGCAGCCGGCGCGGAGCCAGGGCCTGC
ATCGGGGCCAGGCGCAGGTCGGGGCCGGGCCGGGCCCACAGCTGCGAGCCTCCCCACAGG
CGGGCGGCCAGCATGAAGAGGCGCGGGCCCAGCACCAGCGGCTTGCAGGACACCACGGAG
GGCGCAGACAGCTCTTCCTCCAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61831648|ref|XP_589515.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61831648|ref|XP_589515.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               80-725, gnl|bosTau2|chr8 (31433271-31432620)
               

               
               80-725, gnl|Hg17|chr8 (22061785-22062436)
               

               
               80-725, gnl|Mm7|chr14 (65181351-65180700)
               


               
               212-566, gnl|bosTau2|chr18 (39919798-39919444)
               

               
               212-566, gnl|Hg17|chr19 (40309007-40309361)
               

               
               212-566, gnl|Mm7|chr7 (28007635-28007281)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-725, gnl|bosTau2|chr8 (31433271-31432620)
               

               
               80-725, gnl|Hg17|chr8 (22061785-22062436)
               

               
               80-725, gnl|Mm7|chr14 (65181351-65180700)
               


               
               212-566, gnl|bosTau2|chr18 (39919798-39919444)
               

               
               212-566, gnl|Hg17|chr19 (40309007-40309361)
               

               
               212-566, gnl|Mm7|chr7 (28007635-28007281)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	80-725, gnl\|bosTau2\|chr8 (31433271-31432620)
	80-725, gnl\|Hg17\|chr8 (22061785-22062436)
	80-725, gnl\|Mm7\|chr14 (65181351-65180700)

	212-566, gnl\|bosTau2\|chr18 (39919798-39919444)
	212-566, gnl\|Hg17\|chr19 (40309007-40309361)
	212-566, gnl\|Mm7\|chr7 (28007635-28007281)