Ss1.1-Pig2-59D04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATCTGAAGAGGAGGAGGTGGGGGACTGCGATTTTGAAGTGGGGACCTGGAATAGCGGAA TCTGGGGAAGGACCCTGGGCCCTGCAGGTTTACATCATCCAAGTCACTGATGGGAGCCAT GAATGGACAGTCAAGCACCGCTACAGTGATTTCCATGACCTACATGAAAAGCTTGTTGCA GAGAAGAAGATTGATAAAAGTCTGCTTCCGCCCAAAAAGATAATTGGGAAAAACTCAAGG AGCTTGGTGGAAAAGAGGGAGAAGGATCTGGAGGTCTACCTCCAGACACTCCTGGCCACC TTCCCTGACGTGGCCCCCCGAGTGCTGGCCCACTTCTTGCATTTTCACTTCTACGAGATT AATGGCATCACTGCAGCACTGGCTGAGGAGCTTTTTGAAAAAGGAGAACAGCTCCTGGGG GCCGGCGAGGTCTTTGCCATCGGGCCCCTGCAGCTCTATGCGGTCACTGAGCAGCTGCAG CAGGGAAAGCCCACGTGCGCCAGTGGGGATGCCAAGACTGACCTGGGGCACATGCTGGAC TTCACCTGTCGCCTTAAGTACCTTAAGGTTTCTGGCACAGAAGGACCTTTTGGGACCAGC AACATTCAGGAGCAGCACCTGCCATTTGATCTGTCAATATTCAAGTCTCTTCATCAGGTT GAGATAAGTCACTGTGATGCCAAGCACATGCGGGGGCTGGTCGCATCAAAGCCCACCTTA GCCACAATGAGCGTCTGCTTCTCAGCAACCTCCATGAAGGAAGTCCTTGTTCCTGAAGCC TCAGAATTTGATGAGTGGGAGCCAGCAGGGGCAGCCCTGGAGGGCCCTGTGACTGCCATC ATCCCCACATGGCAGGCGCTGACTGCTCTGGACTTGAGTCATAACAGCATCTCCGAGATC GACGAGTCTGTGAAACTTATTCCAAAGATTGAGTTCCTGGATCTGAGTCACAATGGAGTG CTGGTTGTGGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATCTGAAGAGGAGGAGGTGGGGGACTGCGATTTTGAAGTGGGGACCTGGAATAGCGGAA TCTGGGGAAGGACCCTGGGCCCTGCAGGTTTACATCATCCAAGTCACTGATGGGAGCCAT GAATGGACAGTCAAGCACCGCTACAGTGATTTCCATGACCTACATGAAAAGCTTGTTGCA GAGAAGAAGATTGATAAAAGTCTGCTTCCGCCCAAAAAGATAATTGGGAAAAACTCAAGG AGCTTGGTGGAAAAGAGGGAGAAGGATCTGGAGGTCTACCTCCAGACACTCCTGGCCACC TTCCCTGACGTGGCCCCCCGAGTGCTGGCCCACTTCTTGCATTTTCACTTCTACGAGATT AATGGCATCACTGCAGCACTGGCTGAGGAGCTTTTTGAAAAAGGAGAACAGCTCCTGGGG GCCGGCGAGGTCTTTGCCATCGGGCCCCTGCAGCTCTATGCGGTCACTGAGCAGCTGCAG CAGGGAAAGCCCACGTGCGCCAGTGGGGATGCCAAGACTGACCTGGGGCACATGCTGGAC TTCACCTGTCGCCTTAAGTACCTTAAGGTTTCTGGCACAGAAGGACCTTTTGGGACCAGC AACATTCAGGAGCAGCACCTGCCATTTGATCTGTCAATATTCAAGTCTCTTCATCAGGTT GAGATAAGTCACTGTGATGCCAAGCACATGCGGGGGCTGGTCGCATCAAAGCCCACCTTA GCCACAATGAGCGTCTGCTTCTCAGCAACCTCCATGAAGGAAGTCCTTGTTCCTGAAGCC TCAGAATTTGATGAGTGGGAGCCAGCAGGGGCAGCCCTGGAGGGCCCTGTGACTGCCATC ATCCCCACATGGCAGGCGCTGACTGCTCTGGACTTGAGTCATAACAGCATCTCCGAGATC GACGAGTCTGTGAAACTTATTCCAAAGATTGAGTTCCTGGATCTGAGTCACAATGGAGTG CTGGTTGTGGAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 170-355, - strand, RNAz p=0.998831 | |
| 212-329, - strand, RNAz p=0.692422 | |
| 441-569, - strand, RNAz p=0.918684 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 170-355, - strand, RNAz p=0.998831 | |
| 212-329, - strand, RNAz p=0.692422 | |
| 441-569, - strand, RNAz p=0.918684 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 170-355, gnl|bosTau2|chr22 (37043132-37043317) | |
| 170-355, gnl|canFam2|chr20 (40305433-40305194) | |
| 170-355, gnl|danRer3|chr22 (9084424-9084203) | |
| 170-355, gnl|fr1|chrUn (234998181-234997940) | |
| 170-355, gnl|galGal2|chr12 (493468-493670) | |
| 170-355, gnl|hg17|chr3 (52467691-52467936) | |
| 170-355, gnl|Hg17|chr3 (52467716-52467901) | |
| 170-355, gnl|mm7|chr14 (28633085-28632841) | |
| 170-355, gnl|Mm7|chr14 (28633058-28632873) | |
| 170-355, gnl|monDom2|scaffold_5 (70587194-70586977) | |
| 170-355, gnl|oryCun1|scaffold_211720 (5622-5385) | |
| 170-355, gnl|panTro1|chr2 (54083718-54083963) | |
| 170-355, gnl|rheMac2|chr2 (83919188-83918943) | |
| 170-355, gnl|rn3|chr16 (6634496-6634252) | |
| 170-355, gnl|tetNig1|chrUn_random (121391259-121391444) | |
| 170-355, gnl|xenTro1|scaffold_1195 (49701-49925) | |
| 402-569, gnl|bosTau2|chr22 (37052466-37052633) | |
| 402-569, gnl|Hg17|chr3 (52480868-52481035) | |
| 402-569, gnl|Mm7|chr14 (28621197-28621030) | |
| 758-924, gnl|bosTau2|chr22 (37056074-37056240) | |
| 758-924, gnl|Hg17|chr3 (52485501-52485667) | |
| 758-924, gnl|Mm7|chr14 (28618443-28618264) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 170-355, gnl|bosTau2|chr22 (37043132-37043317) | |
| 170-355, gnl|canFam2|chr20 (40305433-40305194) | |
| 170-355, gnl|danRer3|chr22 (9084424-9084203) | |
| 170-355, gnl|fr1|chrUn (234998181-234997940) | |
| 170-355, gnl|galGal2|chr12 (493468-493670) | |
| 170-355, gnl|hg17|chr3 (52467691-52467936) | |
| 170-355, gnl|Hg17|chr3 (52467716-52467901) | |
| 170-355, gnl|mm7|chr14 (28633085-28632841) | |
| 170-355, gnl|Mm7|chr14 (28633058-28632873) | |
| 170-355, gnl|monDom2|scaffold_5 (70587194-70586977) | |
| 170-355, gnl|oryCun1|scaffold_211720 (5622-5385) | |
| 170-355, gnl|panTro1|chr2 (54083718-54083963) | |
| 170-355, gnl|rheMac2|chr2 (83919188-83918943) | |
| 170-355, gnl|rn3|chr16 (6634496-6634252) | |
| 170-355, gnl|tetNig1|chrUn_random (121391259-121391444) | |
| 170-355, gnl|xenTro1|scaffold_1195 (49701-49925) | |
| 402-569, gnl|bosTau2|chr22 (37052466-37052633) | |
| 402-569, gnl|Hg17|chr3 (52480868-52481035) | |
| 402-569, gnl|Mm7|chr14 (28621197-28621030) | |
| 758-924, gnl|bosTau2|chr22 (37056074-37056240) | |
| 758-924, gnl|Hg17|chr3 (52485501-52485667) | |
| 758-924, gnl|Mm7|chr14 (28618443-28618264) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) |