Non-Coding RNA Search

Ss1.1-Pig2-59H20.5

Sequence:


               
               TCAACTTCCCTCCTCTGAGCTAAGCCACAGTGGGGATTGGAACCTCCCTCTCCCCTCAGC
AGACTTAAATCAAGCTGCTTCCATGTTAGTGCATGTCAAGTAGACTAGTACCAAAGGAAG
GGAGGCTGGGACTGGTAGAGACAAGGAAAAGTTTCCTTCATCATCTAGTCTAGAATCATA
ACGGGCAGGAGTCAAAGAGGTTCAAGGGGCCACAAGCAGGGAAATGGGAGCTCGGGGAGA
TTGGGGAAGGAAAGAAAAATGAAGGAGGGGGAGATCTCTAAAGATACAAGTTCCTGCCTG
TGAAGGTGTACAATATGAAGGATTCTTGGGGCTTTGCTGAGCTGCCTACCTCTAACCCCT
CACATCTAGCCATCCCCAGAGGCCACACAAACCAAGTGACCCCTGTTGTGGCCACCTGCC
CCACCATGCCATCAGAGCAGAAGTGAAATAGCCACTCTGTGTGATTTTAGCATGTTTAAT
AATTATGAAAATAACAATAATAAAAAAAACCTCATGTGGGGCCATTTAACCTTTATTTCT
GCTTTTTTTTCTTGGGAGGGATGTGAATGTCAGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAACTTCCCTCCTCTGAGCTAAGCCACAGTGGGGATTGGAACCTCCCTCTCCCCTCAGC
AGACTTAAATCAAGCTGCTTCCATGTTAGTGCATGTCAAGTAGACTAGTACCAAAGGAAG
GGAGGCTGGGACTGGTAGAGACAAGGAAAAGTTTCCTTCATCATCTAGTCTAGAATCATA
ACGGGCAGGAGTCAAAGAGGTTCAAGGGGCCACAAGCAGGGAAATGGGAGCTCGGGGAGA
TTGGGGAAGGAAAGAAAAATGAAGGAGGGGGAGATCTCTAAAGATACAAGTTCCTGCCTG
TGAAGGTGTACAATATGAAGGATTCTTGGGGCTTTGCTGAGCTGCCTACCTCTAACCCCT
CACATCTAGCCATCCCCAGAGGCCACACAAACCAAGTGACCCCTGTTGTGGCCACCTGCC
CCACCATGCCATCAGAGCAGAAGTGAAATAGCCACTCTGTGTGATTTTAGCATGTTTAAT
AATTATGAAAATAACAATAATAAAAAAAACCTCATGTGGGGCCATTTAACCTTTATTTCT
GCTTTTTTTTCTTGGGAGGGATGTGAATGTCAGCCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               352-465, - strand, RNAz p=0.91469
               

               
               409-527, + strand, RNAz p=0.96556

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               352-465, - strand, RNAz p=0.91469
               

               
               409-527, + strand, RNAz p=0.96556

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-576, gnl|bosTau2|chr3 (7528498-7527944)
               

               
               1-576, gnl|Hg17|chr1 (158067795-158068352)
               

               
               1-576, gnl|Mm7|chr1 (171143821-171143225)
               


               
               137-527, gnl|bosTau2|chr1 (23953445-23953071)
               

               
               137-527, gnl|Hg17|chr1 (158067937-158068305)
               

               
               137-527, gnl|Mm7|chr1 (171143787-171143366)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr3 (7528498-7527944)
               

               
               1-576, gnl|Hg17|chr1 (158067795-158068352)
               

               
               1-576, gnl|Mm7|chr1 (171143821-171143225)
               


               
               137-527, gnl|bosTau2|chr1 (23953445-23953071)
               

               
               137-527, gnl|Hg17|chr1 (158067937-158068305)
               

               
               137-527, gnl|Mm7|chr1 (171143787-171143366)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)

	352-465, - strand, RNAz p=0.91469
	409-527, + strand, RNAz p=0.96556

	1-576, gnl\|bosTau2\|chr3 (7528498-7527944)
	1-576, gnl\|Hg17\|chr1 (158067795-158068352)
	1-576, gnl\|Mm7\|chr1 (171143821-171143225)

	137-527, gnl\|bosTau2\|chr1 (23953445-23953071)
	137-527, gnl\|Hg17\|chr1 (158067937-158068305)
	137-527, gnl\|Mm7\|chr1 (171143787-171143366)