Non-Coding RNA Search

Ss1.1-Pig2-59H21.5

Sequence:


               
               TGTGTTGGAAATTACTTTAAAACCAGTTAATTTAGGCATCCCCGTCATGGCTCAGTGGTT
AACGAATCCGACTAGGAACCACAAGGTTGCAGGTTCGATCCCTGGCCTTGCTCAGTGGTT
TAAGGATCCAGCATTGCCGTGAGCTGTGGTGTAGGTCGCAGATGAGGCTCGGATCCCAAG
TGGCTGTAGCGTAGGCCGGCAGCTGTAGCTCCGATGGGACCCCTAACCTGGGAACCTCCA
TATGCCAAGGGCGTGGCCCTAGAAAAAGACAAAAAAAAAAACCCCACAAACCAGTTAATT
TAGGCCAGGGTAGGAGTGGGATACTGCAAGTCTGTGTGTGAGGAGATGTTACCCTACCCC
ACCTCTACCATTTTCTTAATTTGCATTTTATTTTAATAAAAGCCATTTAGATTCTGAGAC
GTGCTAATTCTTAGTTGTGAGAGGTCTATGCAAGTAAGACAGAAAGCTCATTGAATGAAA
TCCTCATTTCTGTCTCTGATAGATATGCTAGCAAACTCCTTTTCTTAGTGGTGTTGAAAT
AATTTAGTAGCTCACTAAGGTGCCAGTTTCTCTCCAGAAAGGTGTGATGTAAGGTTTTTG
ATTGTCTTGTTTGAGAGGGGGTGGGATGGGGGTAGGTCTCAGTTGTCTTCTGAGATAGTC
ATTACCAAGTTATTTGCAGGGTGTCTTTTTTTCACACGATGTGGCAGGTATAATCTGGTT
TTGAAAACATGATTGAAACTGTTGTTTTTTAACTCAGCAGGCAGCCTAGGCCATGGCTGG
GAAGAAAAGGGTAAGTCCTTCCTTGCATGATGATGTGGGCAGGGTTCCTGACTACTGGAT
TCCTAATTTTCATATTTGAATTCACATGTGTGATTTCACATCAATAACTTGTGTTTCTGA
AATATCCCAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGTTGGAAATTACTTTAAAACCAGTTAATTTAGGCATCCCCGTCATGGCTCAGTGGTT
AACGAATCCGACTAGGAACCACAAGGTTGCAGGTTCGATCCCTGGCCTTGCTCAGTGGTT
TAAGGATCCAGCATTGCCGTGAGCTGTGGTGTAGGTCGCAGATGAGGCTCGGATCCCAAG
TGGCTGTAGCGTAGGCCGGCAGCTGTAGCTCCGATGGGACCCCTAACCTGGGAACCTCCA
TATGCCAAGGGCGTGGCCCTAGAAAAAGACAAAAAAAAAAACCCCACAAACCAGTTAATT
TAGGCCAGGGTAGGAGTGGGATACTGCAAGTCTGTGTGTGAGGAGATGTTACCCTACCCC
ACCTCTACCATTTTCTTAATTTGCATTTTATTTTAATAAAAGCCATTTAGATTCTGAGAC
GTGCTAATTCTTAGTTGTGAGAGGTCTATGCAAGTAAGACAGAAAGCTCATTGAATGAAA
TCCTCATTTCTGTCTCTGATAGATATGCTAGCAAACTCCTTTTCTTAGTGGTGTTGAAAT
AATTTAGTAGCTCACTAAGGTGCCAGTTTCTCTCCAGAAAGGTGTGATGTAAGGTTTTTG
ATTGTCTTGTTTGAGAGGGGGTGGGATGGGGGTAGGTCTCAGTTGTCTTCTGAGATAGTC
ATTACCAAGTTATTTGCAGGGTGTCTTTTTTTCACACGATGTGGCAGGTATAATCTGGTT
TTGAAAACATGATTGAAACTGTTGTTTTTTAACTCAGCAGGCAGCCTAGGCCATGGCTGG
GAAGAAAAGGGTAAGTCCTTCCTTGCATGATGATGTGGGCAGGGTTCCTGACTACTGGAT
TCCTAATTTTCATATTTGAATTCACATGTGTGATTTCACATCAATAACTTGTGTTTCTGA
AATATCCCAACT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               292-912, gnl|bosTau2|chr23 (118258-118895)
               

               
               292-912, gnl|Hg17|chr17 (37260625-37259982)
               

               
               292-912, gnl|Mm7|chr11 (100568283-100567613)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               292-912, gnl|bosTau2|chr23 (118258-118895)
               

               
               292-912, gnl|Hg17|chr17 (37260625-37259982)
               

               
               292-912, gnl|Mm7|chr11 (100568283-100567613)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               fat (0.147427)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)

	292-912, gnl\|bosTau2\|chr23 (118258-118895)
	292-912, gnl\|Hg17\|chr17 (37260625-37259982)
	292-912, gnl\|Mm7\|chr11 (100568283-100567613)

	fat (0.147427)
	liv (0.146284)
	sug (0.127291)
	thg (0.126791)
	ecc (0.115035)