Non-Coding RNA Search

Ss1.1-Pig2-59L23.5

Sequence:


               
               CTCTGTACCACCCGGCGCTTGAGCAGATCCACCTGTGGGGTAAGGGCAGGCACAGTTCCC
GAGAGCTGGGGACACCAGGGCTCCCGAGGGCTGGCTCCTACCTGGCCTCCGAGCTCCCGC
TGGCTCTGTCGGGACGCTTGCCGCTGAGCCTGGACCACTAGGCCTGTGCACAGGATCATG
GCCACCAGCAGGATGGCATTCCACAGCTGCTGCAGGGGCTTCTAGGGAGGGGGGATGGGG
AGCAGGGTGTCAGGTTCACTGCGGCGACCCCGCCCTCTTCCCCGAGTAAACCATCCTGAG
GACCAGGCAGGTGAAGTCCACGAGCACCATGACCATGGAGGTTCCTGCTTCCTCTTCTGA
AGGAAGCCGCCCCACAACCTCCACACTCCCAGGGCCCATCCAACTCCACCCTACACAGTG
AGGCAACCCACGTGGGTCCCCAGCCCAGGCCTCTCCTGGTGTTTGTGCACTCACACAAGC
ATCTATCTGGCAGCCTCCCCAGTCCAGGACCCTGTCACCTTCCCACTCCCATCCCTACCT
GGCACTTCTAGTCTGCTTTCTTGGCCACTGTTACCCCAAGAGGTGCTGGGCCCCAACCTG
TTGCCTGGCTCCTCGGGGGCCTCACATCCCCGTGCCCCCCACTGCTCTTCAAGTGCCCTG
CTCTGCCACATGCACCTAGTTCCCTCCCTCAGCCACAGGGAGCTCCCCTGCAAAGCCAGT
CACACAGCACCCCTACCTGACCCTTCCCTGTGATGCTCCCCGTGCCCCCAAGAGGAAACC
CAAACTCTTCTACCAGCCGGCCCTCAAGTCCCTTGAGCTTCGTACTCCTAGCCGCCCAGC
ATCCCTGGTCCTTGCCCCCCAATTCTATGCCTTTCCACACTTCAGTCTTGGGAACCAAGG
CTCATGTTCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGTACCACCCGGCGCTTGAGCAGATCCACCTGTGGGGTAAGGGCAGGCACAGTTCCC
GAGAGCTGGGGACACCAGGGCTCCCGAGGGCTGGCTCCTACCTGGCCTCCGAGCTCCCGC
TGGCTCTGTCGGGACGCTTGCCGCTGAGCCTGGACCACTAGGCCTGTGCACAGGATCATG
GCCACCAGCAGGATGGCATTCCACAGCTGCTGCAGGGGCTTCTAGGGAGGGGGGATGGGG
AGCAGGGTGTCAGGTTCACTGCGGCGACCCCGCCCTCTTCCCCGAGTAAACCATCCTGAG
GACCAGGCAGGTGAAGTCCACGAGCACCATGACCATGGAGGTTCCTGCTTCCTCTTCTGA
AGGAAGCCGCCCCACAACCTCCACACTCCCAGGGCCCATCCAACTCCACCCTACACAGTG
AGGCAACCCACGTGGGTCCCCAGCCCAGGCCTCTCCTGGTGTTTGTGCACTCACACAAGC
ATCTATCTGGCAGCCTCCCCAGTCCAGGACCCTGTCACCTTCCCACTCCCATCCCTACCT
GGCACTTCTAGTCTGCTTTCTTGGCCACTGTTACCCCAAGAGGTGCTGGGCCCCAACCTG
TTGCCTGGCTCCTCGGGGGCCTCACATCCCCGTGCCCCCCACTGCTCTTCAAGTGCCCTG
CTCTGCCACATGCACCTAGTTCCCTCCCTCAGCCACAGGGAGCTCCCCTGCAAAGCCAGT
CACACAGCACCCCTACCTGACCCTTCCCTGTGATGCTCCCCGTGCCCCCAAGAGGAAACC
CAAACTCTTCTACCAGCCGGCCCTCAAGTCCCTTGAGCTTCGTACTCCTAGCCGCCCAGC
ATCCCTGGTCCTTGCCCCCCAATTCTATGCCTTTCCACACTTCAGTCTTGGGAACCAAGG
CTCATGTTCCTC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-362, gnl|bosTau2|chr17 (42577127-42577503)
               

               
               1-362, gnl|Hg17|chr22 (29100717-29101092)
               

               
               1-362, gnl|Mm7|chr11 (4091969-4091622)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-362, gnl|bosTau2|chr17 (42577127-42577503)
               

               
               1-362, gnl|Hg17|chr22 (29100717-29101092)
               

               
               1-362, gnl|Mm7|chr11 (4091969-4091622)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               cov (0.132153)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               cov (0.132153)

	1-362, gnl\|bosTau2\|chr17 (42577127-42577503)
	1-362, gnl\|Hg17\|chr22 (29100717-29101092)
	1-362, gnl\|Mm7\|chr11 (4091969-4091622)