Non-Coding RNA Search

Ss1.1-Pig2-59M03.5

Sequence:


               
               GGGTTTAATACTGATGCAGAAGCCAAAAGGCATATGGACTTGGGACTTCCATCTGAAAGC
ACTTCCCTGGCAACTTCAATTTCCTTTACTGTAAAATTGGGGCAGACATCTCCTCCCTCT
GGACTTGCCTCGGTGATGCAGATCACATCGGAACTGTCACCCGGATGCAATTTATGGCCC
TCTTGCCTCCAGCTTGACTGGTTTATCCTCAGGTCACTGCAAGTCCCTGGCCCCGGGCAA
CGACCGGAACTCGGACACGGACCCGCGCAGGACAAATGTCAAGAACTCATGTGCAAGTGT
GACCAGGCGGTTGCTTACTGCTTAGCCCAAACCGAGTACACCATCAAGTACCTCTTCTAC
CCCCGTTTTCTGTGTGAGAAGGACTCACCCAAATGTGACTGACTAGCCTGACTTGAAATG
TCTTTTTTGCACAAGGAAATAAAACTCCTTTTTGCGTAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTTTAATACTGATGCAGAAGCCAAAAGGCATATGGACTTGGGACTTCCATCTGAAAGC
ACTTCCCTGGCAACTTCAATTTCCTTTACTGTAAAATTGGGGCAGACATCTCCTCCCTCT
GGACTTGCCTCGGTGATGCAGATCACATCGGAACTGTCACCCGGATGCAATTTATGGCCC
TCTTGCCTCCAGCTTGACTGGTTTATCCTCAGGTCACTGCAAGTCCCTGGCCCCGGGCAA
CGACCGGAACTCGGACACGGACCCGCGCAGGACAAATGTCAAGAACTCATGTGCAAGTGT
GACCAGGCGGTTGCTTACTGCTTAGCCCAAACCGAGTACACCATCAAGTACCTCTTCTAC
CCCCGTTTTCTGTGTGAGAAGGACTCACCCAAATGTGACTGACTAGCCTGACTTGAAATG
TCTTTTTTGCACAAGGAAATAAAACTCCTTTTTGCGTAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               25-455, gnl|bosTau2|chr25 (14559592-14560035)
               

               
               25-455, gnl|Hg17|chr16 (14674327-14673913)
               

               
               25-455, gnl|Mm7|chr16 (13262643-13262001)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-455, gnl|bosTau2|chr25 (14559592-14560035)
               

               
               25-455, gnl|Hg17|chr16 (14674327-14673913)
               

               
               25-455, gnl|Mm7|chr16 (13262643-13262001)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               fce (0.271592)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	25-455, gnl\|bosTau2\|chr25 (14559592-14560035)
	25-455, gnl\|Hg17\|chr16 (14674327-14673913)
	25-455, gnl\|Mm7\|chr16 (13262643-13262001)

	fce (0.271592)
	ece (0.229305)
	col (0.195008)
	ton (0.1755)
	fhi (0.169578)
	hyp (0.142837)
	nca (0.136874)
	pla (0.133672)
	cov (0.132153)
	eru (0.120048)
	ebs (0.118301)
	eje (0.0988338)