Non-Coding RNA Search

Ss1.1-Pig2-60A23.5

Sequence:


               
               GGGCTGCGGCGGGAGCCGGGCGGATGCCATTGAGCCCCGCTACTACGAGAGCTGGACCAG
GGAGACGGAGTCCACCTGGCTCACCTACACTGACTCGGACGCTCCGCCCAGCAACGCCGC
CCCGGACAGCGGCCCCGAGGCAGGCGGCCTGCAAGCCGGTGTGCTGGAAGATGGCGTGTC
TGCCAATGGTGTGCCCCGGTCTACAGCCCCAGGTGGAACATCCAACCCAGAGAAGAAGAT
GAGCTGTGGGACCCAGTGCCCGAATCCCCAGAGCCTCGGCTCAGGCCCCCTGACCCAGAA
ACAGAATGGCCTCCGGACTACAGAGGCTAAAAGGGATGCTAAGCGGACATCTGCAAAAGA
AGTCACCATTAATGTCACAGAAAGCATCCGACAGGTGGACAGAAATCAAAGAATCACAAA
GAAATGCATCAACTAGGAGAGCTGAGGGCCAGATGGACTTCTTTGGTGCCCTTCGCATCC
TGGATCCTATCGAGGAACTTTGAAGAAGCGGGTGGCCCTTGCTGCGTGGGAACGCTGCGG
AATGCCTTGTGAGACCCTGTATTACCCGGCAGCACTGCTGCCTAAGCATTGGCAGCCTCC
TGTTTATCGTGTAAACGTATCGGCAGAGCACTCCCATAGGGTATTAAACTGCAAATGTGC
GTTCAGTTTGCCTCTTGCTCTCGGGCAGTCTGGTCTGATGGAAACGTGGTGAGCTAAAAC
CACCTGCTGCCGTAGTGTGTGCTGGGTCGGGCAAGCTTATTCTTTCTTTCTTTTTAAAAT
ACCACCAACACAAAGTGTACTGTGTTCAGTTACAAGTTGGCTTCCACCCAGTTCTAAACC
CTCATGTATGAGAAATCAAGAAAACAGGAAAACGTTGTTATTCTTGTTTCCTTAGCCCAG
TATGAGATGGATTCAGGTCCAATTTTATACACACTGACCCCACTGACACCCATGGCGTGT
GCTGGGGCCTCTCTGGGATACAGCCACACCCACATCTCTCTCCTCCACCTTCACCCTCCT
GGCCCAGGCCAGGGTCCATGTCAGCCTCTGAATCATAGCATCACAGTCATGGGCAATGCA
TCCAACCTCGGACGCCCTTGCGGCTCTGCAGACATTGTGTTTCTCCAGCTTTCCTCTTCC
TTTCCTTGTGCTGAGCGTTTTTTCTCTCCATTCAGGCCATTTGCAATTGTTAATCAAAGA
CCAGCCACTGCTCACAAGAGGGAGAAGATCTGAAACGTGTCGGCTTTCTTTTAGCCTCTC
CTTGCACACCCAGGACTGTGTCATTTGGTGTCTGCAAAGGAATCGATTTAAGAAGCCGGT
ACCTGGTGGATGTGTGTTCACGGGAACATCAGATCGCCATGCAGTGTGTTAAAAATCAGG
CAGCTGAGACGGGAAAAAATAAGTAAATAAATACCCAATTTTGATAGGATTTTCTAGCAT
TTCTTTAAACATGTAAAGGTAGAAGTATTTTCCTCCAAAGTAATGTAGCATGATTTTTAG
AGGACTCTTAACGTGCCTGGGATTGGGAGAGGGAGGACTAAAGTTGTACCCAATCATACT
AATAAACTCCACATTTAGCAGAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTGCGGCGGGAGCCGGGCGGATGCCATTGAGCCCCGCTACTACGAGAGCTGGACCAG
GGAGACGGAGTCCACCTGGCTCACCTACACTGACTCGGACGCTCCGCCCAGCAACGCCGC
CCCGGACAGCGGCCCCGAGGCAGGCGGCCTGCAAGCCGGTGTGCTGGAAGATGGCGTGTC
TGCCAATGGTGTGCCCCGGTCTACAGCCCCAGGTGGAACATCCAACCCAGAGAAGAAGAT
GAGCTGTGGGACCCAGTGCCCGAATCCCCAGAGCCTCGGCTCAGGCCCCCTGACCCAGAA
ACAGAATGGCCTCCGGACTACAGAGGCTAAAAGGGATGCTAAGCGGACATCTGCAAAAGA
AGTCACCATTAATGTCACAGAAAGCATCCGACAGGTGGACAGAAATCAAAGAATCACAAA
GAAATGCATCAACTAGGAGAGCTGAGGGCCAGATGGACTTCTTTGGTGCCCTTCGCATCC
TGGATCCTATCGAGGAACTTTGAAGAAGCGGGTGGCCCTTGCTGCGTGGGAACGCTGCGG
AATGCCTTGTGAGACCCTGTATTACCCGGCAGCACTGCTGCCTAAGCATTGGCAGCCTCC
TGTTTATCGTGTAAACGTATCGGCAGAGCACTCCCATAGGGTATTAAACTGCAAATGTGC
GTTCAGTTTGCCTCTTGCTCTCGGGCAGTCTGGTCTGATGGAAACGTGGTGAGCTAAAAC
CACCTGCTGCCGTAGTGTGTGCTGGGTCGGGCAAGCTTATTCTTTCTTTCTTTTTAAAAT
ACCACCAACACAAAGTGTACTGTGTTCAGTTACAAGTTGGCTTCCACCCAGTTCTAAACC
CTCATGTATGAGAAATCAAGAAAACAGGAAAACGTTGTTATTCTTGTTTCCTTAGCCCAG
TATGAGATGGATTCAGGTCCAATTTTATACACACTGACCCCACTGACACCCATGGCGTGT
GCTGGGGCCTCTCTGGGATACAGCCACACCCACATCTCTCTCCTCCACCTTCACCCTCCT
GGCCCAGGCCAGGGTCCATGTCAGCCTCTGAATCATAGCATCACAGTCATGGGCAATGCA
TCCAACCTCGGACGCCCTTGCGGCTCTGCAGACATTGTGTTTCTCCAGCTTTCCTCTTCC
TTTCCTTGTGCTGAGCGTTTTTTCTCTCCATTCAGGCCATTTGCAATTGTTAATCAAAGA
CCAGCCACTGCTCACAAGAGGGAGAAGATCTGAAACGTGTCGGCTTTCTTTTAGCCTCTC
CTTGCACACCCAGGACTGTGTCATTTGGTGTCTGCAAAGGAATCGATTTAAGAAGCCGGT
ACCTGGTGGATGTGTGTTCACGGGAACATCAGATCGCCATGCAGTGTGTTAAAAATCAGG
CAGCTGAGACGGGAAAAAATAAGTAAATAAATACCCAATTTTGATAGGATTTTCTAGCAT
TTCTTTAAACATGTAAAGGTAGAAGTATTTTCCTCCAAAGTAATGTAGCATGATTTTTAG
AGGACTCTTAACGTGCCTGGGATTGGGAGAGGGAGGACTAAAGTTGTACCCAATCATACT
AATAAACTCCACATTTAGCAGAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|17980127|gb|AAL50518.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|17980127|gb|AAL50518.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               324-723, gnl|bosTau2|chr14 (37376395-37376789)
               

               
               324-723, gnl|Hg17|chr8 (104309391-104309811)
               

               
               324-723, gnl|Mm7|chr15 (38953866-38954239)
               


               
               742-1584, gnl|bosTau2|chr14 (37376880-37377680)
               

               
               742-1584, gnl|Hg17|chr8 (104309906-104310754)
               

               
               742-1584, gnl|Mm7|chr15 (38954311-38955122)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               324-723, gnl|bosTau2|chr14 (37376395-37376789)
               

               
               324-723, gnl|Hg17|chr8 (104309391-104309811)
               

               
               324-723, gnl|Mm7|chr15 (38953866-38954239)
               


               
               742-1584, gnl|bosTau2|chr14 (37376880-37377680)
               

               
               742-1584, gnl|Hg17|chr8 (104309906-104310754)
               

               
               742-1584, gnl|Mm7|chr15 (38954311-38955122)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cbe (0.239234)
               

               
               fbs (0.175346)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               fbs (0.175346)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	324-723, gnl\|bosTau2\|chr14 (37376395-37376789)
	324-723, gnl\|Hg17\|chr8 (104309391-104309811)
	324-723, gnl\|Mm7\|chr15 (38953866-38954239)

	742-1584, gnl\|bosTau2\|chr14 (37376880-37377680)
	742-1584, gnl\|Hg17\|chr8 (104309906-104310754)
	742-1584, gnl\|Mm7\|chr15 (38954311-38955122)