Non-Coding RNA Search

Ss1.1-Pig2-60M14.5

Sequence:


               
               GTGACAGGGTCCTGCTCGGTCTTCGCCAGCTAGAAGAACTACAGTCCCCAGCAGGCACCG
TTGTGCCAGGCTGGGGTGGCTAGGGGGCCCTCCCTCCAACCTCGGTGCCTGAGCGGCTTG
ATCAGAGCTGCAGCAACTGCAGCAAGAGGTGTCACTAGTTAAAGGCATCTGCTGAAAGAT
TTGGAACAGAAGAAGGTGGCTACTCCAAACCAGCCCAACGGTAATACAGAGTCACCAGCA
GCCCTGGAGGAGGCCAAGATCTCTGGTGCTCCTGGGAGCCCCAAAACATCCCCTGAGCCT
CATGACCCTGGAGGTTCCCTGCCCCTGACACCCCAGATGGAGAGCCACTCAGAGGAGGAA
GATCCTCCTGTGGCTGGAGGTGGCCTGGGCTGGAACGGTAGGGGTTCCGGCTCTCAGAGC
CCAGGGGGCTGCTCAGTGGAGGCCGTACTGGCCCGGAAGAAGCACCGCCGGCGGCCTTCA
AGGCGCAAGCGGCACTGGCGGCCCTACCTGGAGCTGAGCTGGGCTGAGAAGCAACAGCGG
GATGAGAGGCAGAGCCAGAGGGCCTCCCGGGTCCGAGAGGAGATGTTCGCCAAGGGCCAG
CCTGTGGCACCCTAGAACACCACCCAGTTCCTGATGAACGACCGAGACCCTGAGGAGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGACAGGGTCCTGCTCGGTCTTCGCCAGCTAGAAGAACTACAGTCCCCAGCAGGCACCG
TTGTGCCAGGCTGGGGTGGCTAGGGGGCCCTCCCTCCAACCTCGGTGCCTGAGCGGCTTG
ATCAGAGCTGCAGCAACTGCAGCAAGAGGTGTCACTAGTTAAAGGCATCTGCTGAAAGAT
TTGGAACAGAAGAAGGTGGCTACTCCAAACCAGCCCAACGGTAATACAGAGTCACCAGCA
GCCCTGGAGGAGGCCAAGATCTCTGGTGCTCCTGGGAGCCCCAAAACATCCCCTGAGCCT
CATGACCCTGGAGGTTCCCTGCCCCTGACACCCCAGATGGAGAGCCACTCAGAGGAGGAA
GATCCTCCTGTGGCTGGAGGTGGCCTGGGCTGGAACGGTAGGGGTTCCGGCTCTCAGAGC
CCAGGGGGCTGCTCAGTGGAGGCCGTACTGGCCCGGAAGAAGCACCGCCGGCGGCCTTCA
AGGCGCAAGCGGCACTGGCGGCCCTACCTGGAGCTGAGCTGGGCTGAGAAGCAACAGCGG
GATGAGAGGCAGAGCCAGAGGGCCTCCCGGGTCCGAGAGGAGATGTTCGCCAAGGGCCAG
CCTGTGGCACCCTAGAACACCACCCAGTTCCTGATGAACGACCGAGACCCTGAGGAGCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|19684067|gb|AAH25970.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19684067|gb|AAH25970.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               257-515, gnl|bosTau2|chr19 (37187420-37187162)
               

               
               257-515, gnl|Hg17|chr17 (40602163-40602421)
               

               
               257-515, gnl|Mm7|chr11 (103247226-103247484)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               257-515, gnl|bosTau2|chr19 (37187420-37187162)
               

               
               257-515, gnl|Hg17|chr17 (40602163-40602421)
               

               
               257-515, gnl|Mm7|chr11 (103247226-103247484)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nje (0.16592)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	257-515, gnl\|bosTau2\|chr19 (37187420-37187162)
	257-515, gnl\|Hg17\|chr17 (40602163-40602421)
	257-515, gnl\|Mm7\|chr11 (103247226-103247484)