Ss1.1-Pig2-60O05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGCTCTGGGTGCCAGCGACGCGCGTGTTGTGGCCGGGTGCGGGAACCCGATCGGAGCC GGCGGGGTGGCGGGTGCCGTCACAGGAAACAAGTGATCATGGTGCTCAACAGTTTGGATA AGATGATTCAACTCCAGAAAAACACTGCTAACATCAGGAATATCTGTGTTTTGGCTCATG TTGACCATGGAAAAACTACTCTGGCTGACTGTCTTATATCTAGCAATGGAATCATCTCCA GTCGCCTGGCAGGCAAGTTAAGGTACATGGACAGCAGAGAAGATGAGCAGATCCGAGGGA TCACTATGAAATCGAGCGCCATTTCACTGCATTATGCAAAAGATGATGAGGAGTACCTGA TTAATCTGATAGACTCTCCAGGACATGTGGATTTTTCCTCGGAAGTATCGACGGCCGTTC GCATTTGTGATGGGTGCATCATTGTGGTGGATGCTGTAGAAGGGGTCTGTCCGCAGACAC AGGCCGTTCTGCGACAAGCCTGGCTGGAAAACATCCGTCCGGTTTTGGTGATTAATAAGA TAGATCGCTTGATAGTGGAACTGAAATTCACCCCGCAAGAGGCCTATTCTCACCTCAAGA ATATTTTAGAACAGATTAATGCACTCACAGGAACTCTTTTTACTTCTAAAGTCCTAGAAG AAAGAGCAGAGAGAGTGACTGAATCCCAAGTGAATCCACATTCTGAGCAAGGAGAGCAGG TGTATGACTGGAGCACTGGCCTGGAGGACACAGATGATTCTCACCTCTACTTCTCCCCAG ATCAGGGAAATGTGGTGTTTACGAGTGCAATAGATGGGTGGGGCTTTGGAATCGAGCACT TTGCCAAAATCTACAGTCAAAAAACTGGCATCAGAAAAGAAGTTCTTTTGAAAACCTTGT GGGGAGATTATTATATAAATATGAAGGCTAAGAAGATTATGAAGGTTGATCAGGCAAAAG GAAAGAAGCCTTTATTTGTACAGTTGATCCTGGAAAATATATGGAGTTTGTATGATGCTG TCTTGAAAAAGGACAAAGAAAAAATTGATAAAATCGTGACTTCTTTAGGATTAAAGATTG GAGCCCGGGAGGCACGACATTCAGATCCTAAAGTTCAGATCAATGCTATTTGCAGCCAGT GGCTACCCATATCTCAAGCTGTTCTTGCTATGGTGTGTCAGAAGCTTCCTAGTCCTCTTG ATATTACGGCCGAGAGAGTGGAGAAGCTGATGTGCGCAGGATCACAAACATTCGATTCCC TTCCTCCAGAAACCCAGGCCCTGAAAGCAGCTTTTATGAAATGTGGAAGTGAAGACACTG CTCCAGTTATTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGCTCTGGGTGCCAGCGACGCGCGTGTTGTGGCCGGGTGCGGGAACCCGATCGGAGCC GGCGGGGTGGCGGGTGCCGTCACAGGAAACAAGTGATCATGGTGCTCAACAGTTTGGATA AGATGATTCAACTCCAGAAAAACACTGCTAACATCAGGAATATCTGTGTTTTGGCTCATG TTGACCATGGAAAAACTACTCTGGCTGACTGTCTTATATCTAGCAATGGAATCATCTCCA GTCGCCTGGCAGGCAAGTTAAGGTACATGGACAGCAGAGAAGATGAGCAGATCCGAGGGA TCACTATGAAATCGAGCGCCATTTCACTGCATTATGCAAAAGATGATGAGGAGTACCTGA TTAATCTGATAGACTCTCCAGGACATGTGGATTTTTCCTCGGAAGTATCGACGGCCGTTC GCATTTGTGATGGGTGCATCATTGTGGTGGATGCTGTAGAAGGGGTCTGTCCGCAGACAC AGGCCGTTCTGCGACAAGCCTGGCTGGAAAACATCCGTCCGGTTTTGGTGATTAATAAGA TAGATCGCTTGATAGTGGAACTGAAATTCACCCCGCAAGAGGCCTATTCTCACCTCAAGA ATATTTTAGAACAGATTAATGCACTCACAGGAACTCTTTTTACTTCTAAAGTCCTAGAAG AAAGAGCAGAGAGAGTGACTGAATCCCAAGTGAATCCACATTCTGAGCAAGGAGAGCAGG TGTATGACTGGAGCACTGGCCTGGAGGACACAGATGATTCTCACCTCTACTTCTCCCCAG ATCAGGGAAATGTGGTGTTTACGAGTGCAATAGATGGGTGGGGCTTTGGAATCGAGCACT TTGCCAAAATCTACAGTCAAAAAACTGGCATCAGAAAAGAAGTTCTTTTGAAAACCTTGT GGGGAGATTATTATATAAATATGAAGGCTAAGAAGATTATGAAGGTTGATCAGGCAAAAG GAAAGAAGCCTTTATTTGTACAGTTGATCCTGGAAAATATATGGAGTTTGTATGATGCTG TCTTGAAAAAGGACAAAGAAAAAATTGATAAAATCGTGACTTCTTTAGGATTAAAGATTG GAGCCCGGGAGGCACGACATTCAGATCCTAAAGTTCAGATCAATGCTATTTGCAGCCAGT GGCTACCCATATCTCAAGCTGTTCTTGCTATGGTGTGTCAGAAGCTTCCTAGTCCTCTTG ATATTACGGCCGAGAGAGTGGAGAAGCTGATGTGCGCAGGATCACAAACATTCGATTCCC TTCCTCCAGAAACCCAGGCCCTGAAAGCAGCTTTTATGAAATGTGGAAGTGAAGACACTG CTCCAGTTATTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 359-476, - strand, RNAz p=0.817552 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 359-476, - strand, RNAz p=0.817552 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 349-476, gnl|bosTau2|chr21 (16338159-16338032) | |
| 349-476, gnl|Hg17|chr15 (82561793-82561920) | |
| 349-476, gnl|Mm7|chr7 (78593284-78593411) | |
| 613-829, gnl|bosTau2|chr21 (16334477-16334261) | |
| 613-829, gnl|canFam2|chr3 (58605831-58605585) | |
| 613-829, gnl|danRer3|chr1 (35432548-35432304) | |
| 613-829, gnl|dasNov1|scaffold_10643 (57523-57767) | |
| 613-829, gnl|echTel1|scaffold_249212 (781-1027) | |
| 613-829, gnl|fr1|chrUn (243712803-243713040) | |
| 613-829, gnl|galGal2|chr10 (12262095-12261863) | |
| 613-829, gnl|hg17|chr15 (80317695-80317941) | |
| 613-829, gnl|Hg17|chr15 (82564359-82564575) | |
| 613-829, gnl|loxAfr1|scaffold_46115 (4619-4373) | |
| 613-829, gnl|mm7|chr7 (78596265-78596019) | |
| 613-829, gnl|Mm7|chr7 (78596039-78596255) | |
| 613-829, gnl|monDom2|scaffold_45 (3323988-3323741) | |
| 613-829, gnl|oryCun1|scaffold_176057 (101896-102142) | |
| 613-829, gnl|panTro1|chr16 (81099482-81099728) | |
| 613-829, gnl|rheMac2|chr7 (61400826-61401072) | |
| 613-829, gnl|rn3|chr1 (139023024-139022778) | |
| 613-829, gnl|xenTro1|scaffold_789 (220608-220838) | |
| 954-1258, gnl|bosTau2|chr23 (15092114-15091831) | |
| 954-1258, gnl|Hg17|chr2 (160126532-160126818) | |
| 1031-1171, gnl|bosTau2|chr21 (16325153-16325013) | |
| 1031-1171, gnl|canFam2|chr3 (58617576-58617396) | |
| 1031-1171, gnl|danRer3|chr1 (35442223-35442065) | |
| 1031-1171, gnl|dasNov1|scaffold_10643 (42088-42273) | |
| 1031-1171, gnl|echTel1|scaffold_256140 (7409-7223) | |
| 1031-1171, gnl|fr1|chrUn (243712073-243712260) | |
| 1031-1171, gnl|galGal2|chr10 (12264467-12264302) | |
| 1031-1171, gnl|hg17|chr15 (80307558-80307741) | |
| 1031-1171, gnl|Hg17|chr15 (82572590-82572730) | |
| 1031-1171, gnl|loxAfr1|scaffold_46115 (14927-14742) | |
| 1031-1171, gnl|mm7|chr7 (78605544-78605361) | |
| 1031-1171, gnl|Mm7|chr7 (78605377-78605517) | |
| 1031-1171, gnl|monDom2|scaffold_45 (3338805-3338629) | |
| 1031-1171, gnl|oryCun1|scaffold_176057 (88282-88465) | |
| 1031-1171, gnl|panTro1|chr16 (81089627-81089810) | |
| 1031-1171, gnl|rheMac2|chr7 (61390483-61390666) | |
| 1031-1171, gnl|rn3|chr1 (139031692-139031510) | |
| 1031-1171, gnl|tetNig1|chrUn_random (32798062-32798209) | |
| 1031-1171, gnl|xenTro1|scaffold_789 (208672-208854) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 349-476, gnl|bosTau2|chr21 (16338159-16338032) | |
| 349-476, gnl|Hg17|chr15 (82561793-82561920) | |
| 349-476, gnl|Mm7|chr7 (78593284-78593411) | |
| 613-829, gnl|bosTau2|chr21 (16334477-16334261) | |
| 613-829, gnl|canFam2|chr3 (58605831-58605585) | |
| 613-829, gnl|danRer3|chr1 (35432548-35432304) | |
| 613-829, gnl|dasNov1|scaffold_10643 (57523-57767) | |
| 613-829, gnl|echTel1|scaffold_249212 (781-1027) | |
| 613-829, gnl|fr1|chrUn (243712803-243713040) | |
| 613-829, gnl|galGal2|chr10 (12262095-12261863) | |
| 613-829, gnl|hg17|chr15 (80317695-80317941) | |
| 613-829, gnl|Hg17|chr15 (82564359-82564575) | |
| 613-829, gnl|loxAfr1|scaffold_46115 (4619-4373) | |
| 613-829, gnl|mm7|chr7 (78596265-78596019) | |
| 613-829, gnl|Mm7|chr7 (78596039-78596255) | |
| 613-829, gnl|monDom2|scaffold_45 (3323988-3323741) | |
| 613-829, gnl|oryCun1|scaffold_176057 (101896-102142) | |
| 613-829, gnl|panTro1|chr16 (81099482-81099728) | |
| 613-829, gnl|rheMac2|chr7 (61400826-61401072) | |
| 613-829, gnl|rn3|chr1 (139023024-139022778) | |
| 613-829, gnl|xenTro1|scaffold_789 (220608-220838) | |
| 954-1258, gnl|bosTau2|chr23 (15092114-15091831) | |
| 954-1258, gnl|Hg17|chr2 (160126532-160126818) | |
| 1031-1171, gnl|bosTau2|chr21 (16325153-16325013) | |
| 1031-1171, gnl|canFam2|chr3 (58617576-58617396) | |
| 1031-1171, gnl|danRer3|chr1 (35442223-35442065) | |
| 1031-1171, gnl|dasNov1|scaffold_10643 (42088-42273) | |
| 1031-1171, gnl|echTel1|scaffold_256140 (7409-7223) | |
| 1031-1171, gnl|fr1|chrUn (243712073-243712260) | |
| 1031-1171, gnl|galGal2|chr10 (12264467-12264302) | |
| 1031-1171, gnl|hg17|chr15 (80307558-80307741) | |
| 1031-1171, gnl|Hg17|chr15 (82572590-82572730) | |
| 1031-1171, gnl|loxAfr1|scaffold_46115 (14927-14742) | |
| 1031-1171, gnl|mm7|chr7 (78605544-78605361) | |
| 1031-1171, gnl|Mm7|chr7 (78605377-78605517) | |
| 1031-1171, gnl|monDom2|scaffold_45 (3338805-3338629) | |
| 1031-1171, gnl|oryCun1|scaffold_176057 (88282-88465) | |
| 1031-1171, gnl|panTro1|chr16 (81089627-81089810) | |
| 1031-1171, gnl|rheMac2|chr7 (61390483-61390666) | |
| 1031-1171, gnl|rn3|chr1 (139031692-139031510) | |
| 1031-1171, gnl|tetNig1|chrUn_random (32798062-32798209) | |
| 1031-1171, gnl|xenTro1|scaffold_789 (208672-208854) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |