Non-Coding RNA Search

Ss1.1-Pig2-60O20.5

Sequence:


               
               ACTGGCCCCACGCTCTCTTGTAGCCCCAGTAGAGTCAATATGGGGCCCCATCATGCCCCT
CAGTGAAGCCTGCAGCTTGAGCAGATAGCATGGCCTGCCACTGGGGGTGAACACCATGGC
TACAGGAGGTGGCCGGGCCTTTGCTTGGCAGGTGTTCCCATCCATGCCCACCTGCCGGGT
ATATGGTACAGTGGCATTCCAGGATGGGCACCTGCTAGTTCTAGGGGGCTGTGGCCGGAC
TGGACTGCCTCTGGACACTGCAGAGACACTGGACATGGCCTCACATACTTGGCTGGCACT
GGCGCCCCTGCCCACTGCTCGGGCAGGCGCAGCTGCTGTGGTACTGGGCAAGCAGGTGCT
AGTGGTGGGTGGAGTGGATGAGGCCCAGAGCCCAGTAGCTGCTGTAGAGGCCTTCCTGGC
TGATGAGGGCCGCTGGGAGCGTCGGGCCACCCTCCCTCAGGCAGCCATGGGGGTTGCGAC
TATGGAAAGAGATGGTATGGTGTATGCACTGGGGGGAATGGGCCCTGACACGGCCCCCCA
GGCCCAGGTTCGGGTGTATGAACCCCGCCGGGACTGCTGGCTTTCGCTGCCCTCGATGCC
CACACCCTGCTATGGGGCTTCTACCTTCCTACATGGGAACAAGATCTATGTCCTGGGGGG
CCGCCAGGGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGGCCCCACGCTCTCTTGTAGCCCCAGTAGAGTCAATATGGGGCCCCATCATGCCCCT
CAGTGAAGCCTGCAGCTTGAGCAGATAGCATGGCCTGCCACTGGGGGTGAACACCATGGC
TACAGGAGGTGGCCGGGCCTTTGCTTGGCAGGTGTTCCCATCCATGCCCACCTGCCGGGT
ATATGGTACAGTGGCATTCCAGGATGGGCACCTGCTAGTTCTAGGGGGCTGTGGCCGGAC
TGGACTGCCTCTGGACACTGCAGAGACACTGGACATGGCCTCACATACTTGGCTGGCACT
GGCGCCCCTGCCCACTGCTCGGGCAGGCGCAGCTGCTGTGGTACTGGGCAAGCAGGTGCT
AGTGGTGGGTGGAGTGGATGAGGCCCAGAGCCCAGTAGCTGCTGTAGAGGCCTTCCTGGC
TGATGAGGGCCGCTGGGAGCGTCGGGCCACCCTCCCTCAGGCAGCCATGGGGGTTGCGAC
TATGGAAAGAGATGGTATGGTGTATGCACTGGGGGGAATGGGCCCTGACACGGCCCCCCA
GGCCCAGGTTCGGGTGTATGAACCCCGCCGGGACTGCTGGCTTTCGCTGCCCTCGATGCC
CACACCCTGCTATGGGGCTTCTACCTTCCTACATGGGAACAAGATCTATGTCCTGGGGGG
CCGCCAGGGCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|59857995|gb|AAX08832.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|59857995|gb|AAX08832.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               115-234, - strand, RNAz p=0.541323
               

               
               275-434, + strand, RNAz p=0.981268

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-234, - strand, RNAz p=0.541323
               

               
               275-434, + strand, RNAz p=0.981268

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-494, gnl|bosTau2|chr22 (37694850-37695343)
               

               
               1-494, gnl|Hg17|chr3 (49185092-49185585)
               

               
               1-494, gnl|Mm7|chr9 (108184684-108184186)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-494, gnl|bosTau2|chr22 (37694850-37695343)
               

               
               1-494, gnl|Hg17|chr3 (49185092-49185585)
               

               
               1-494, gnl|Mm7|chr9 (108184684-108184186)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	115-234, - strand, RNAz p=0.541323
	275-434, + strand, RNAz p=0.981268

	1-494, gnl\|bosTau2\|chr22 (37694850-37695343)
	1-494, gnl\|Hg17\|chr3 (49185092-49185585)
	1-494, gnl\|Mm7\|chr9 (108184684-108184186)