Non-Coding RNA Search

Ss1.1-Pig2-63E20.5.5

Sequence:


               
               AGACAGTAAATCAATCAATCAATAAATAAATAAATAAAAATAAAAAAAATTAAGGGCCTT
TGAAAAGTGTAACTAGAATAAATATGTTTTGGGAATACAAAATAACCTTCTGCAGTACCA
CAAAGTATTAAGTGATTAACTGTCATTTGCAACACAGTATTCCACTGCGTTTGTACATAG
AACACATAGAAGAAAACCCAAACAGGTAAAAATGAAAATTCTGACTCTCTTGTGTTCTTT
AGTCTACTGAGTTCAATAAAGTAAACAAACCACTTGAGCTGGGCTGCATCCTATGACTGA
TTGTCAGTAGCTTGCCATCTGGGGAATGGATGAGCCTGTAACTCCTTGTGTATTCACATG
CCCATTAGTGAATAGTTAAGAATATATTGTTTAAGAGTGACTGAGAGGGCATATTTGTAC
ATGTTAAAGATCTTGATAACAGTTTTGTGCATATCTTTCCAAAAGCTAGAGCCCTTTAAG
AATGATTTAAACATATTCTTATTTAACTTTTTCCCCCAATTTTTATTTTTGAAATTGATG
GCAGCTGTCTGATACACAAGGATGAAAATTTCTGCTTACCCTGGAAGAGTGTATGTACGT
GTATGTGTATGTGTGTGTGCATATGTGTGTGTATGTTTGTGTGCTCATGCTTTCTTAAAA
TGTCAAGTAGATAATTGTTGATTTTAAAACCATTGCTGTCAGACTGAGATCTTGTATGCC
AAACTTTAAACTGCTTGTATGTTTTAAGGCTGAAAATGTGAAAATCCTAAAAGGATTTCA
TATTGAATATATGTACACAGTCTTAACTATAGTGGTGGTAAACATACTACTATAATTTAT
TATTCTATCTTCCAGATAATGTTAGAACAAATAAGGTATATTTTTAGAATCAACTTTGTA
AGCACTGTAAATCTTTAATAAGTTATAAGGTCTATGATGTGTTTACTTTGAAAATTGCTG
TTTAAAGCAAGATGTATTAAATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACAGTAAATCAATCAATCAATAAATAAATAAATAAAAATAAAAAAAATTAAGGGCCTT
TGAAAAGTGTAACTAGAATAAATATGTTTTGGGAATACAAAATAACCTTCTGCAGTACCA
CAAAGTATTAAGTGATTAACTGTCATTTGCAACACAGTATTCCACTGCGTTTGTACATAG
AACACATAGAAGAAAACCCAAACAGGTAAAAATGAAAATTCTGACTCTCTTGTGTTCTTT
AGTCTACTGAGTTCAATAAAGTAAACAAACCACTTGAGCTGGGCTGCATCCTATGACTGA
TTGTCAGTAGCTTGCCATCTGGGGAATGGATGAGCCTGTAACTCCTTGTGTATTCACATG
CCCATTAGTGAATAGTTAAGAATATATTGTTTAAGAGTGACTGAGAGGGCATATTTGTAC
ATGTTAAAGATCTTGATAACAGTTTTGTGCATATCTTTCCAAAAGCTAGAGCCCTTTAAG
AATGATTTAAACATATTCTTATTTAACTTTTTCCCCCAATTTTTATTTTTGAAATTGATG
GCAGCTGTCTGATACACAAGGATGAAAATTTCTGCTTACCCTGGAAGAGTGTATGTACGT
GTATGTGTATGTGTGTGTGCATATGTGTGTGTATGTTTGTGTGCTCATGCTTTCTTAAAA
TGTCAAGTAGATAATTGTTGATTTTAAAACCATTGCTGTCAGACTGAGATCTTGTATGCC
AAACTTTAAACTGCTTGTATGTTTTAAGGCTGAAAATGTGAAAATCCTAAAAGGATTTCA
TATTGAATATATGTACACAGTCTTAACTATAGTGGTGGTAAACATACTACTATAATTTAT
TATTCTATCTTCCAGATAATGTTAGAACAAATAAGGTATATTTTTAGAATCAACTTTGTA
AGCACTGTAAATCTTTAATAAGTTATAAGGTCTATGATGTGTTTACTTTGAAAATTGCTG
TTTAAAGCAAGATGTATTAAATAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               31-616, gnl|bosTau2|chr18 (40396401-40396983)
               

               
               31-616, gnl|Hg17|chr2 (118582845-118583421)
               

               
               31-616, gnl|Mm7|chr1 (121176039-121175542)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-616, gnl|bosTau2|chr18 (40396401-40396983)
               

               
               31-616, gnl|Hg17|chr2 (118582845-118583421)
               

               
               31-616, gnl|Mm7|chr1 (121176039-121175542)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               liv (0.292569)
               

               
               sto (0.179824)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               sto (0.179824)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)

	31-616, gnl\|bosTau2\|chr18 (40396401-40396983)
	31-616, gnl\|Hg17\|chr2 (118582845-118583421)
	31-616, gnl\|Mm7\|chr1 (121176039-121175542)

	liv (0.292569)
	sto (0.179824)
	mga (0.160205)
	lin (0.145603)
	pty (0.142714)
	nmm (0.132802)
	kid (0.129735)
	ova (0.129132)
	ebs (0.118301)