Non-Coding RNA Search

Ss1.1-Pig2-63E24.5.5

Sequence:


               
               AAAGACGGCTGCAGAGAGAGTGAGGCAGATGAGTTCTCAGTGGGAACTCCTCCAAATGGA
TTGCAAGAGAAATACTAAATTGATTCTAAATCTGTTCCATTCTTTTCTCTGTAGGATGCA
AAACATCCAGCTTTAGCGTAGAAGCATGCATTTTCATATTCGCAATCAAAGCACAGAAGG
ACAGAGTTAAATTTGAGACAGCCAGTTCGAGCTTTGGGCATCATTGTATTGAATGTAATG
ATGCATTTATTCTTTTAGTCAGGACTTCTGTCTTGTCGGCGGGCAGAGAAGTAAGCTGTG
TGTTTTTGGGCCCCGTGTGATCTCTGGAAGACTGAGCCTGCTTACCCTTTCACTCGAGTC
TTTGTTCTTCCCTCTCACTGAGTCAGCCTCATTCTTTCCAATCTCATTGGATATCGATGT
ATTCCGTGTGCGTTTGGCTGCAGATGTTAGAAAACCGAACGCTCAATGAAGAGCTAAGGA
GCCTGGGAGTGGGCACTCGGGCCTGTCTCTATGAGGTAGATGACCCACTATCTTTGGCAT
TTTTTCCTCGCCCTCCTTACCCCTTGTCCTTTGGCCTATACTGCCTCATAGTCCCAAGAC
GGGTCATGGAACCGCCAGGTCTGACGTCTGCCTCCTAAGCAGAAAGGGAGAAGAGGCAAG
TGACAGGGTACAATGTCTGCGTCGTGAAAGCAAAGCTTTCCCAGAGAGGCTCGGCTAACA
TCCATTGGTTAGAACCTGTCACGTGGCTCCCCCAGCCGCATGTGAGTCTGGGAAGGGAAA
TGCTTACCAGGTAGGCACATGCTCTGAATGGTGTTCTCTAAATAAGGCAGGGGTTGGTCC
TTGGGAGGGGAACATTGCTCTATCAGATGTTCTTGTGTATCCCTGTCATTGTCCTACCTG
CCTCCTTCCCTCTCCTGCCCACCTCCTCCAAATACTCTCGTAGGACCTTACAGTGGCCCA
CCCCTCCCCTTGGATTTGACATAGAACTCCCAATCAAAATCATTTCTCAGCCCTAATAAA
AATGTTCATTCTGGATGAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGCCTTTTAAA
ATTTTCCTTGGGGGGGCCAAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGACGGCTGCAGAGAGAGTGAGGCAGATGAGTTCTCAGTGGGAACTCCTCCAAATGGA
TTGCAAGAGAAATACTAAATTGATTCTAAATCTGTTCCATTCTTTTCTCTGTAGGATGCA
AAACATCCAGCTTTAGCGTAGAAGCATGCATTTTCATATTCGCAATCAAAGCACAGAAGG
ACAGAGTTAAATTTGAGACAGCCAGTTCGAGCTTTGGGCATCATTGTATTGAATGTAATG
ATGCATTTATTCTTTTAGTCAGGACTTCTGTCTTGTCGGCGGGCAGAGAAGTAAGCTGTG
TGTTTTTGGGCCCCGTGTGATCTCTGGAAGACTGAGCCTGCTTACCCTTTCACTCGAGTC
TTTGTTCTTCCCTCTCACTGAGTCAGCCTCATTCTTTCCAATCTCATTGGATATCGATGT
ATTCCGTGTGCGTTTGGCTGCAGATGTTAGAAAACCGAACGCTCAATGAAGAGCTAAGGA
GCCTGGGAGTGGGCACTCGGGCCTGTCTCTATGAGGTAGATGACCCACTATCTTTGGCAT
TTTTTCCTCGCCCTCCTTACCCCTTGTCCTTTGGCCTATACTGCCTCATAGTCCCAAGAC
GGGTCATGGAACCGCCAGGTCTGACGTCTGCCTCCTAAGCAGAAAGGGAGAAGAGGCAAG
TGACAGGGTACAATGTCTGCGTCGTGAAAGCAAAGCTTTCCCAGAGAGGCTCGGCTAACA
TCCATTGGTTAGAACCTGTCACGTGGCTCCCCCAGCCGCATGTGAGTCTGGGAAGGGAAA
TGCTTACCAGGTAGGCACATGCTCTGAATGGTGTTCTCTAAATAAGGCAGGGGTTGGTCC
TTGGGAGGGGAACATTGCTCTATCAGATGTTCTTGTGTATCCCTGTCATTGTCCTACCTG
CCTCCTTCCCTCTCCTGCCCACCTCCTCCAAATACTCTCGTAGGACCTTACAGTGGCCCA
CCCCTCCCCTTGGATTTGACATAGAACTCCCAATCAAAATCATTTCTCAGCCCTAATAAA
AATGTTCATTCTGGATGAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGCCTTTTAAA
ATTTTCCTTGGGGGGGCCAAATTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.77175

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.77175

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1042, gnl|bosTau2|chrX (41202347-41201301)
               

               
               1-1042, gnl|Hg17|chrX (10012352-10013417)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1042, gnl|bosTau2|chrX (41202347-41201301)
               

               
               1-1042, gnl|Hg17|chrX (10012352-10013417)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.339155)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)

	1-1042, gnl\|bosTau2\|chrX (41202347-41201301)
	1-1042, gnl\|Hg17\|chrX (10012352-10013417)