Ss1.1-Pig2-63G10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCATCAATGGCCAGACTGTGAAACTTAAATATTGTTTCACCTGCAAGATTTTCCGGCCC CCTCGTGCCTCTCATTGTAGCCTTTGCGATAACTGCGTAGAACGGTTTGATCACCACTGT CCCTGGGTAGGCAACTGTGTGGGGAAAAGAAACTACAGATTTTTTTATATGTTTATTTTA TCTCTGTCTTTCCTGACAGTCTTTATATTTGCATTCGTTATCACCCACGTCACTCTTCGT TCACAGCAAGCGGGATTCCTAAACGCCCTCAAGGACAGTCCTGCAAGCGTGCTGGAGGCC GTGGTCTGCTTCTTCTCCGTCTGGTCCATCGTGGGGCTCTCGGGTTTCCACACGTACCTG ATCAGCTCCAACCAGACCACGAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCATCAATGGCCAGACTGTGAAACTTAAATATTGTTTCACCTGCAAGATTTTCCGGCCC CCTCGTGCCTCTCATTGTAGCCTTTGCGATAACTGCGTAGAACGGTTTGATCACCACTGT CCCTGGGTAGGCAACTGTGTGGGGAAAAGAAACTACAGATTTTTTTATATGTTTATTTTA TCTCTGTCTTTCCTGACAGTCTTTATATTTGCATTCGTTATCACCCACGTCACTCTTCGT TCACAGCAAGCGGGATTCCTAAACGCCCTCAAGGACAGTCCTGCAAGCGTGCTGGAGGCC GTGGTCTGCTTCTTCTCCGTCTGGTCCATCGTGGGGCTCTCGGGTTTCCACACGTACCTG ATCAGCTCCAACCAGACCACGAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 279-384, + strand, RNAz p=0.96622 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 279-384, + strand, RNAz p=0.96622 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AK124573, + |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 99-240, gnl|bosTau2|chr9 (57753340-57753481) | |
| 99-240, gnl|canFam2|chr1 (50218742-50218899) | |
| 99-240, gnl|danRer3|chr14 (32534034-32534189) | |
| 99-240, gnl|dasNov1|scaffold_153199 (5167-5324) | |
| 99-240, gnl|echTel1|scaffold_285700 (39917-40074) | |
| 99-240, gnl|fr1|chrUn (266242105-266242264) | |
| 99-240, gnl|galGal2|chr3 (50608565-50608722) | |
| 99-240, gnl|hg17|chr6 (158019778-158019935) | |
| 99-240, gnl|Hg17|chr6 (158019788-158019929) | |
| 99-240, gnl|loxAfr1|scaffold_18563 (40435-40592) | |
| 99-240, gnl|mm7|chr17 (5657576-5657733) | |
| 99-240, gnl|Mm7|chr17 (5657586-5657727) | |
| 99-240, gnl|monDom2|scaffold_0 (46222243-46222086) | |
| 99-240, gnl|oryCun1|scaffold_176528 (70154-69994) | |
| 99-240, gnl|panTro1|chr5 (161663424-161663581) | |
| 99-240, gnl|rheMac2|chr4 (105301601-105301444) | |
| 99-240, gnl|rn3|chr1_random (389896-389739) | |
| 99-240, gnl|tetNig1|chr10 (3631210-3631369) | |
| 99-240, gnl|xenTro1|scaffold_124 (1606530-1606373) | |
| 279-384, gnl|bosTau2|chr9 (57772849-57772954) | |
| 279-384, gnl|canFam2|chr1 (50237374-50237500) | |
| 279-384, gnl|canFam2|chr1 (50237374-50237500) | |
| 279-384, gnl|danRer3|chr14 (32544893-32545004) | |
| 279-384, gnl|danRer3|chr16 (46093849-46093722) | |
| 279-384, gnl|dasNov1|scaffold_214144 (450-575) | |
| 279-384, gnl|dasNov1|scaffold_214144 (450-575) | |
| 279-384, gnl|echTel1|scaffold_309240 (14898-15022) | |
| 279-384, gnl|echTel1|scaffold_309240 (14898-15022) | |
| 279-384, gnl|fr1|chrUn (266243808-266243932) | |
| 279-384, gnl|fr1|chrUn (266243808-266243932) | |
| 279-384, gnl|hg17|chr6 (158037162-158037287) | |
| 279-384, gnl|Hg17|chr6 (158037169-158037274) | |
| 279-384, gnl|hg17|chr6_random (1872847-1872972) | |
| 279-384, gnl|loxAfr1|scaffold_180124 (512-387) | |
| 279-384, gnl|loxAfr1|scaffold_180124 (512-387) | |
| 279-384, gnl|mm7|chr17 (5670412-5670536) | |
| 279-384, gnl|mm7|chr17 (5670412-5670536) | |
| 279-384, gnl|Mm7|chr17 (5670419-5670523) | |
| 279-384, gnl|monDom2|scaffold_0 (46196473-46196348) | |
| 279-384, gnl|monDom2|scaffold_0 (46196473-46196348) | |
| 279-384, gnl|oryCun1|scaffold_176528 (69405-69276) | |
| 279-384, gnl|oryCun1|scaffold_176528 (69405-69276) | |
| 279-384, gnl|panTro1|chr5_random (14257970-14257845) | |
| 279-384, gnl|panTro1|chr5_random (14257970-14257845) | |
| 279-384, gnl|rheMac2|chr4 (105284272-105284147) | |
| 279-384, gnl|rheMac2|chr4 (105284272-105284147) | |
| 279-384, gnl|rn3|chr1_random (377267-377143) | |
| 279-384, gnl|rn3|chr1_random (377267-377143) | |
| 279-384, gnl|tetNig1|chr10 (3633972-3634101) | |
| 279-384, gnl|tetNig1|chr10 (3633972-3634101) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 99-240, gnl|bosTau2|chr9 (57753340-57753481) | |
| 99-240, gnl|canFam2|chr1 (50218742-50218899) | |
| 99-240, gnl|danRer3|chr14 (32534034-32534189) | |
| 99-240, gnl|dasNov1|scaffold_153199 (5167-5324) | |
| 99-240, gnl|echTel1|scaffold_285700 (39917-40074) | |
| 99-240, gnl|fr1|chrUn (266242105-266242264) | |
| 99-240, gnl|galGal2|chr3 (50608565-50608722) | |
| 99-240, gnl|hg17|chr6 (158019778-158019935) | |
| 99-240, gnl|Hg17|chr6 (158019788-158019929) | |
| 99-240, gnl|loxAfr1|scaffold_18563 (40435-40592) | |
| 99-240, gnl|mm7|chr17 (5657576-5657733) | |
| 99-240, gnl|Mm7|chr17 (5657586-5657727) | |
| 99-240, gnl|monDom2|scaffold_0 (46222243-46222086) | |
| 99-240, gnl|oryCun1|scaffold_176528 (70154-69994) | |
| 99-240, gnl|panTro1|chr5 (161663424-161663581) | |
| 99-240, gnl|rheMac2|chr4 (105301601-105301444) | |
| 99-240, gnl|rn3|chr1_random (389896-389739) | |
| 99-240, gnl|tetNig1|chr10 (3631210-3631369) | |
| 99-240, gnl|xenTro1|scaffold_124 (1606530-1606373) | |
| 279-384, gnl|bosTau2|chr9 (57772849-57772954) | |
| 279-384, gnl|canFam2|chr1 (50237374-50237500) | |
| 279-384, gnl|canFam2|chr1 (50237374-50237500) | |
| 279-384, gnl|danRer3|chr14 (32544893-32545004) | |
| 279-384, gnl|danRer3|chr16 (46093849-46093722) | |
| 279-384, gnl|dasNov1|scaffold_214144 (450-575) | |
| 279-384, gnl|dasNov1|scaffold_214144 (450-575) | |
| 279-384, gnl|echTel1|scaffold_309240 (14898-15022) | |
| 279-384, gnl|echTel1|scaffold_309240 (14898-15022) | |
| 279-384, gnl|fr1|chrUn (266243808-266243932) | |
| 279-384, gnl|fr1|chrUn (266243808-266243932) | |
| 279-384, gnl|hg17|chr6 (158037162-158037287) | |
| 279-384, gnl|Hg17|chr6 (158037169-158037274) | |
| 279-384, gnl|hg17|chr6_random (1872847-1872972) | |
| 279-384, gnl|loxAfr1|scaffold_180124 (512-387) | |
| 279-384, gnl|loxAfr1|scaffold_180124 (512-387) | |
| 279-384, gnl|mm7|chr17 (5670412-5670536) | |
| 279-384, gnl|mm7|chr17 (5670412-5670536) | |
| 279-384, gnl|Mm7|chr17 (5670419-5670523) | |
| 279-384, gnl|monDom2|scaffold_0 (46196473-46196348) | |
| 279-384, gnl|monDom2|scaffold_0 (46196473-46196348) | |
| 279-384, gnl|oryCun1|scaffold_176528 (69405-69276) | |
| 279-384, gnl|oryCun1|scaffold_176528 (69405-69276) | |
| 279-384, gnl|panTro1|chr5_random (14257970-14257845) | |
| 279-384, gnl|panTro1|chr5_random (14257970-14257845) | |
| 279-384, gnl|rheMac2|chr4 (105284272-105284147) | |
| 279-384, gnl|rheMac2|chr4 (105284272-105284147) | |
| 279-384, gnl|rn3|chr1_random (377267-377143) | |
| 279-384, gnl|rn3|chr1_random (377267-377143) | |
| 279-384, gnl|tetNig1|chr10 (3633972-3634101) | |
| 279-384, gnl|tetNig1|chr10 (3633972-3634101) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |