Ss1.1-Pig2-64C20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAGGGCTCGGCGGGCCATTGGCTCCCGGCAGCGGCAAAGGCAGCTTGAGGACTAGAAGA GCAAGCGGGGCCCGCGGGTCGGGCTTGGGACAACCTGGGCTGCAGCCATGGAGGACCAGA GGGAGGCTCTGCGCAAGATCATCACGACACTGGCTGTTAAAAATGAAGAGATTCAGAGTT TCATTTACTCCCTCAAGCAGATGCTGCTGAATGTGGAGGCAAACTCAGCCAAGGTGCAGG AGGACCTGGAGGCTGAGTTCCAGTCCCTCTTCTCTCTCCTGGAGGAGCTGAAAGAGGGCA TGCTTATGAAGATAAAGCAGGACCGGGCCAGCCGAACCTATGAGCTGCAGAACCAGCTGG CTGCCTGCACTCGAGCCCTCGAGAGCTCTGAAGAGCTTCTGGAGACAGCCAACCAGACCC TGCAGGCCACGGACAGCGGGGACTTTCCTCAGGCTGCCAAGCAAATCAAAGATGGTGTGA CAATGGCCCCAGCCTTCCGGCTCTCATTGAAAGCCAAGGTCAGCGACAACATGAGTCACC TCATGGTGGACTTTGCACAGGAGCGGAGGATGCTACAGGCACTCACATTCCTGCCTGTGC CTAGTGCCCCTGTGATCGACCTGGCTGAGTCCCTGGTGGCCGATAACTGTGTAACCCTGG TGTGGCGCATGCCAGACGAGGACAACAAGATTGACCACTACGTGCTGGAGTACCGGCGGA CCAACTTTGAGGGCCCACCCCGCCTCAAGGAGGACCAGCCCTGGATGGTCATTGAGGGGA TCCGGCAGACGGAATACACTCTGACCGGTCTCAAGTTTGACATGAAATACATGAATTTCC GGGTGAAGGCCTGTAATAAGGCAGTTTCAGGCGAGTTCTCCGAGCCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAGGGCTCGGCGGGCCATTGGCTCCCGGCAGCGGCAAAGGCAGCTTGAGGACTAGAAGA GCAAGCGGGGCCCGCGGGTCGGGCTTGGGACAACCTGGGCTGCAGCCATGGAGGACCAGA GGGAGGCTCTGCGCAAGATCATCACGACACTGGCTGTTAAAAATGAAGAGATTCAGAGTT TCATTTACTCCCTCAAGCAGATGCTGCTGAATGTGGAGGCAAACTCAGCCAAGGTGCAGG AGGACCTGGAGGCTGAGTTCCAGTCCCTCTTCTCTCTCCTGGAGGAGCTGAAAGAGGGCA TGCTTATGAAGATAAAGCAGGACCGGGCCAGCCGAACCTATGAGCTGCAGAACCAGCTGG CTGCCTGCACTCGAGCCCTCGAGAGCTCTGAAGAGCTTCTGGAGACAGCCAACCAGACCC TGCAGGCCACGGACAGCGGGGACTTTCCTCAGGCTGCCAAGCAAATCAAAGATGGTGTGA CAATGGCCCCAGCCTTCCGGCTCTCATTGAAAGCCAAGGTCAGCGACAACATGAGTCACC TCATGGTGGACTTTGCACAGGAGCGGAGGATGCTACAGGCACTCACATTCCTGCCTGTGC CTAGTGCCCCTGTGATCGACCTGGCTGAGTCCCTGGTGGCCGATAACTGTGTAACCCTGG TGTGGCGCATGCCAGACGAGGACAACAAGATTGACCACTACGTGCTGGAGTACCGGCGGA CCAACTTTGAGGGCCCACCCCGCCTCAAGGAGGACCAGCCCTGGATGGTCATTGAGGGGA TCCGGCAGACGGAATACACTCTGACCGGTCTCAAGTTTGACATGAAATACATGAATTTCC GGGTGAAGGCCTGTAATAAGGCAGTTTCAGGCGAGTTCTCCGAGCCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 217-335, - strand, RNAz p=0.97125 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 217-335, - strand, RNAz p=0.97125 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-120, gnl|bosTau2|chr7 (14984031-14984149) | |
| 1-120, gnl|Hg17|chr19 (4255640-4255756) | |
| 217-350, gnl|bosTau2|chr7 (14985339-14985472) | |
| 217-350, gnl|Hg17|chr19 (4257193-4257326) | |
| 217-350, gnl|Mm7|chr17 (54147575-54147708) | |
| 589-809, gnl|bosTau2|chr7 (14988222-14988443) | |
| 589-809, gnl|canFam2|chr20 (58288030-58287875) | |
| 589-809, gnl|danRer3|chr8 (10206708-10206574) | |
| 589-809, gnl|dasNov1|scaffold_93369 (3285-3436) | |
| 589-809, gnl|echTel1|scaffold_293966 (4638-4485) | |
| 589-809, gnl|fr1|chrUn (199795718-199795574) | |
| 589-809, gnl|galGal2|chrUn (23484200-23484339) | |
| 589-809, gnl|hg17|chr19 (4262815-4262970) | |
| 589-809, gnl|Hg17|chr19 (4262829-4263050) | |
| 589-809, gnl|loxAfr1|scaffold_7699 (37689-37538) | |
| 589-809, gnl|mm7|chr17 (54150598-54150751) | |
| 589-809, gnl|Mm7|chr17 (54150610-54150831) | |
| 589-809, gnl|monDom2|scaffold_85 (1117031-1117181) | |
| 589-809, gnl|oryCun1|scaffold_206866 (282539-282402) | |
| 589-809, gnl|panTro1|chr20 (4547132-4547287) | |
| 589-809, gnl|rheMac2|chr19 (4170830-4170985) | |
| 589-809, gnl|rn3|chrUn (25773445-25773308) | |
| 589-809, gnl|tetNig1|chr1_random (3105598-3105746) | |
| 589-809, gnl|xenTro1|scaffold_294 (1166889-1167046) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-120, gnl|bosTau2|chr7 (14984031-14984149) | |
| 1-120, gnl|Hg17|chr19 (4255640-4255756) | |
| 217-350, gnl|bosTau2|chr7 (14985339-14985472) | |
| 217-350, gnl|Hg17|chr19 (4257193-4257326) | |
| 217-350, gnl|Mm7|chr17 (54147575-54147708) | |
| 589-809, gnl|bosTau2|chr7 (14988222-14988443) | |
| 589-809, gnl|canFam2|chr20 (58288030-58287875) | |
| 589-809, gnl|danRer3|chr8 (10206708-10206574) | |
| 589-809, gnl|dasNov1|scaffold_93369 (3285-3436) | |
| 589-809, gnl|echTel1|scaffold_293966 (4638-4485) | |
| 589-809, gnl|fr1|chrUn (199795718-199795574) | |
| 589-809, gnl|galGal2|chrUn (23484200-23484339) | |
| 589-809, gnl|hg17|chr19 (4262815-4262970) | |
| 589-809, gnl|Hg17|chr19 (4262829-4263050) | |
| 589-809, gnl|loxAfr1|scaffold_7699 (37689-37538) | |
| 589-809, gnl|mm7|chr17 (54150598-54150751) | |
| 589-809, gnl|Mm7|chr17 (54150610-54150831) | |
| 589-809, gnl|monDom2|scaffold_85 (1117031-1117181) | |
| 589-809, gnl|oryCun1|scaffold_206866 (282539-282402) | |
| 589-809, gnl|panTro1|chr20 (4547132-4547287) | |
| 589-809, gnl|rheMac2|chr19 (4170830-4170985) | |
| 589-809, gnl|rn3|chrUn (25773445-25773308) | |
| 589-809, gnl|tetNig1|chr1_random (3105598-3105746) | |
| 589-809, gnl|xenTro1|scaffold_294 (1166889-1167046) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |