Non-Coding RNA Search

Ss1.1-Pig2-64D02.5.5

Sequence:


               
               AGAATGAACGCATAAAATTTAGCAATTGAAAATCTTTCTTTACTGCAAGTTTAAATAGTT
GTACAGATAGTTTATAAGCACAATATTTTAAGAAAAAAAAAAGTGGCTGGTCTACTAGGC
AGCCTTTGTGCCACTTCAGTGCTAGAAAGTTAAAGAAAAAAAAAAAACTTTTGTGATTTA
ATGATACTATTTCTGTGGAATAATTATGAAAGTATGACCTTTTTAAATCAAACTTATTTG
GATGCATCGGAACCAGCAGAGCTGTGTTACATTTTCTATCTTTGCTAGAACTTCGTCATC
GAAGGACAATTATTTCTTCAAAAGTGGTTGTAACTCACAATGCAGCAGTTTCTCCAAACA
CACACGCGCACGCCACATCGCTTTTCCAGCCCCTCAACTGGAAACGGCATTTTGGACCCT
GTGTTCCAAAACCTTCCACAGGTCAATCTTTCTATTTGAACCGTCCGTTCCAACTTGAAA
TCAGTTGAATACTAAGGCACTTTACTTCCTTACGTACTTTCAATTTTTCCATCACGAGCT
GAACAGGCATCACCCTAGAGGAATTTCTAGCCAGGATACTGCAGGCAGCCTGCTGAGCAG
CCCAGTATTTCCAAAAAGGTAAAACTGGTCGTGTGGCCACTATTTGTCTTCCATTTGGTG
ATTTTTGCCAAATCCAGTGAGTCCTCCACTCGGCCGCGGTTTTTTTCTCCCCTGCCTACT
GTTAGGGTTCCCCCTCTGCCAGGGGCCAGGCACAAGGCTAGACAGAACGAGAGGAAAGGA
AGCGTGGGGAGCCTGGAACCAACGGCCACTTAGGGGCGTCAGGGTCCCTGAACTCTGGTA
GTCAGAAGGCGAGAGCTGGCCCTTCTTCCCTTTCTTAAGTAGAGACTTCGAGTCCTGTGC
ACCTGACCCAGGCGAGAGAGCTGGTGGCACCGTTTATTTTCTGTCTTACTACAGAAGTCA
CAGGACCTCCCAGAACCTGCACTGACACGAGCATAAACACGTTGCCAAGACGCCTCAGGC
TCTAGCTCTAGTCGACGGATTTGCCACAGAAAGCAATAGTTCCTCTTTGAAATTGCCGCC
CACTGCCCCTCCCCCCAGCCCCTTGGGACAGGTCAGGACCAGGCCCCACCTACTCCACAC
CCCTCTTCACCCCTGAAACCCATGTTCAACTGCTCACATCAAGATTCTGTTAATACTCTT
CCAGGTTTTAAGAAGATCAACTTTTGTCATATGCTGTAGTTTAAATAAACTGCATTTACA
GGCCTACTTTCTGTAACATTGTGTATACAAGACGGAAACTGCTCCAGCTGTCAACTACGA
ACACCTGCCAAGACACCTTCTCCAGGGCGTCGGGGCGCATTTTAGGTTAATTCATACAAT
ATAAAAATGCCTCCGTGTGACTGTTGATTTGCTGAACTTCACAAAGTGAATTGTCTGTGG
TACTTTAGTTAATAAAACGGTGATTTTTTTTCTGAGTTACTGAACAAGCAGGCATTACCC
AGGGTGATCTGGCAATGACCTTTTGTGTGTGTGGGCCACAAATACTGATTTTTTTTCCCA
TGAACAAATTTTCTGTTTTTTTTTAGAAACTAATATGTCTTCACACTATAGTTTGTGTAA
CATTGTTCACATTATCTATGTTTCTGTTACTTTTGTGCTTTTATTCTTTTCAGACCTTAT
TAAAAACAAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATGAACGCATAAAATTTAGCAATTGAAAATCTTTCTTTACTGCAAGTTTAAATAGTT
GTACAGATAGTTTATAAGCACAATATTTTAAGAAAAAAAAAAGTGGCTGGTCTACTAGGC
AGCCTTTGTGCCACTTCAGTGCTAGAAAGTTAAAGAAAAAAAAAAAACTTTTGTGATTTA
ATGATACTATTTCTGTGGAATAATTATGAAAGTATGACCTTTTTAAATCAAACTTATTTG
GATGCATCGGAACCAGCAGAGCTGTGTTACATTTTCTATCTTTGCTAGAACTTCGTCATC
GAAGGACAATTATTTCTTCAAAAGTGGTTGTAACTCACAATGCAGCAGTTTCTCCAAACA
CACACGCGCACGCCACATCGCTTTTCCAGCCCCTCAACTGGAAACGGCATTTTGGACCCT
GTGTTCCAAAACCTTCCACAGGTCAATCTTTCTATTTGAACCGTCCGTTCCAACTTGAAA
TCAGTTGAATACTAAGGCACTTTACTTCCTTACGTACTTTCAATTTTTCCATCACGAGCT
GAACAGGCATCACCCTAGAGGAATTTCTAGCCAGGATACTGCAGGCAGCCTGCTGAGCAG
CCCAGTATTTCCAAAAAGGTAAAACTGGTCGTGTGGCCACTATTTGTCTTCCATTTGGTG
ATTTTTGCCAAATCCAGTGAGTCCTCCACTCGGCCGCGGTTTTTTTCTCCCCTGCCTACT
GTTAGGGTTCCCCCTCTGCCAGGGGCCAGGCACAAGGCTAGACAGAACGAGAGGAAAGGA
AGCGTGGGGAGCCTGGAACCAACGGCCACTTAGGGGCGTCAGGGTCCCTGAACTCTGGTA
GTCAGAAGGCGAGAGCTGGCCCTTCTTCCCTTTCTTAAGTAGAGACTTCGAGTCCTGTGC
ACCTGACCCAGGCGAGAGAGCTGGTGGCACCGTTTATTTTCTGTCTTACTACAGAAGTCA
CAGGACCTCCCAGAACCTGCACTGACACGAGCATAAACACGTTGCCAAGACGCCTCAGGC
TCTAGCTCTAGTCGACGGATTTGCCACAGAAAGCAATAGTTCCTCTTTGAAATTGCCGCC
CACTGCCCCTCCCCCCAGCCCCTTGGGACAGGTCAGGACCAGGCCCCACCTACTCCACAC
CCCTCTTCACCCCTGAAACCCATGTTCAACTGCTCACATCAAGATTCTGTTAATACTCTT
CCAGGTTTTAAGAAGATCAACTTTTGTCATATGCTGTAGTTTAAATAAACTGCATTTACA
GGCCTACTTTCTGTAACATTGTGTATACAAGACGGAAACTGCTCCAGCTGTCAACTACGA
ACACCTGCCAAGACACCTTCTCCAGGGCGTCGGGGCGCATTTTAGGTTAATTCATACAAT
ATAAAAATGCCTCCGTGTGACTGTTGATTTGCTGAACTTCACAAAGTGAATTGTCTGTGG
TACTTTAGTTAATAAAACGGTGATTTTTTTTCTGAGTTACTGAACAAGCAGGCATTACCC
AGGGTGATCTGGCAATGACCTTTTGTGTGTGTGGGCCACAAATACTGATTTTTTTTCCCA
TGAACAAATTTTCTGTTTTTTTTTAGAAACTAATATGTCTTCACACTATAGTTTGTGTAA
CATTGTTCACATTATCTATGTTTCTGTTACTTTTGTGCTTTTATTCTTTTCAGACCTTAT
TAAAAACAAACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               37-156, + strand, RNAz p=0.669632

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-156, + strand, RNAz p=0.669632

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_012309, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_012309, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1688, gnl|bosTau2|chr29 (42376556-42374919)
               

               
               1-1688, gnl|Hg17|chr11 (69994984-69993284)
               

               
               1-1688, gnl|Mm7|chr7 (140847893-140849597)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1688, gnl|bosTau2|chr29 (42376556-42374919)
               

               
               1-1688, gnl|Hg17|chr11 (69994984-69993284)
               

               
               1-1688, gnl|Mm7|chr7 (140847893-140849597)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               fce (0.543183)
               

               
               pro (0.512033)
               

               
               mgp (0.230681)
               

               
               cmu (0.186393)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               pro (0.512033)
               

               
               mgp (0.230681)
               

               
               cmu (0.186393)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	1-1688, gnl\|bosTau2\|chr29 (42376556-42374919)
	1-1688, gnl\|Hg17\|chr11 (69994984-69993284)
	1-1688, gnl\|Mm7\|chr7 (140847893-140849597)

	fce (0.543183)
	pro (0.512033)
	mgp (0.230681)
	cmu (0.186393)
	fhi (0.169578)
	fco (0.157208)
	pty (0.142714)
	lyg (0.133103)
	nmm (0.132802)
	sug (0.127291)
	thg (0.126791)
	tra (0.123092)
	ecc (0.115035)
	spc (0.113366)