Non-Coding RNA Search

Ss1.1-Pig2-64G01.5

Sequence:


               
               GTGGAAGGGTACCCCCACAGTGTGTGAATATGTGCATGAGTGAAGATATATATGCAAAAG
ATGTGTGTTTATGTATGAGTGAGTTCGAGTATACAGATTTGTGGTGGGTGTTTGTGAGTG
AGCCCTTGTGTGCGCAGGCCTATGTGTAGGGGTCCATGTGTAAAAGGTGCAGGCATGGGA
GAACTATATTCGGAACATGTGTATTTTCAGGCTGACTCACAAGTAGGTGTGCAAATATAT
GTTCATTGCATCTGTAGGATGTCCATCCACGCCCTGTGTTACCCATGGCCTACAGTAGCC
TTTTTTCTCCGCAGGGTCCTAATGCTCCCTTTGGAGAGGGCTAGCCTGCTCTGATTTATC
CCAAGGCTGTGGCTGATCCATTCTCTTGGGATTGCTCAGGCCACCTCTCCTTATCCCTCC
CCTTTACTCCCCCCAGGCCTTGCTCTGGTAAGGCTGTTGTCCCTGATGGTGGATATGCTG
AGGGAAGTTAGGTGGCTGCTCTGGCCTGCCATGGCTTTTTGGCTGCAGTTTTGTCAGGGC
AGTTGGTAGGAACTTGATGTCAGGGAAGGGAGCTGGGATGGTTGACTGAGGCCATGGCAG
GGATGGGGGCGGGATCAGAGAAGCTAGGGGACTGTCCCTTTTGAACTCGGTCTTGGGGCA
CACGGGAGATGGGGATGAGGGAGATGACAATGGCAGAACCCTGTGAAGACCAGGAGAATG
GGAATTCTAAAATACCAGTTCCAAACAAATCGTATCTCACCACTGCAAAGGAACTGTTGC
AAACCATGCCGACTTAAGCGTCTGATGAAAAGGAATCTGTGTTAATATAATGTCATATGT
CAATTATACTTCAATAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGAAGGGTACCCCCACAGTGTGTGAATATGTGCATGAGTGAAGATATATATGCAAAAG
ATGTGTGTTTATGTATGAGTGAGTTCGAGTATACAGATTTGTGGTGGGTGTTTGTGAGTG
AGCCCTTGTGTGCGCAGGCCTATGTGTAGGGGTCCATGTGTAAAAGGTGCAGGCATGGGA
GAACTATATTCGGAACATGTGTATTTTCAGGCTGACTCACAAGTAGGTGTGCAAATATAT
GTTCATTGCATCTGTAGGATGTCCATCCACGCCCTGTGTTACCCATGGCCTACAGTAGCC
TTTTTTCTCCGCAGGGTCCTAATGCTCCCTTTGGAGAGGGCTAGCCTGCTCTGATTTATC
CCAAGGCTGTGGCTGATCCATTCTCTTGGGATTGCTCAGGCCACCTCTCCTTATCCCTCC
CCTTTACTCCCCCCAGGCCTTGCTCTGGTAAGGCTGTTGTCCCTGATGGTGGATATGCTG
AGGGAAGTTAGGTGGCTGCTCTGGCCTGCCATGGCTTTTTGGCTGCAGTTTTGTCAGGGC
AGTTGGTAGGAACTTGATGTCAGGGAAGGGAGCTGGGATGGTTGACTGAGGCCATGGCAG
GGATGGGGGCGGGATCAGAGAAGCTAGGGGACTGTCCCTTTTGAACTCGGTCTTGGGGCA
CACGGGAGATGGGGATGAGGGAGATGACAATGGCAGAACCCTGTGAAGACCAGGAGAATG
GGAATTCTAAAATACCAGTTCCAAACAAATCGTATCTCACCACTGCAAAGGAACTGTTGC
AAACCATGCCGACTTAAGCGTCTGATGAAAAGGAATCTGTGTTAATATAATGTCATATGT
CAATTATACTTCAATAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               236-432, - strand, RNAz p=0.999959

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               236-432, - strand, RNAz p=0.999959

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               277-430, 511167 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM107054.1|), 
blast E-value=9e-16, identity=82.47% 
               

               
               277-430, 689225 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB439561.1|), 
blast E-value=9e-16, identity=82.47% 
               

               
               277-430, 1234661 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN284895.1|), 
blast E-value=9e-16, identity=82.47% 
               

               
               277-430, 1240277 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN286192.1|), 
blast E-value=9e-16, identity=82.47% 
               

               
               277-430, 1266578 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN523120.1|), 
blast E-value=9e-16, identity=82.47% 
               

               
               277-430, LB02751.CR_K10 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE348612.1|), 
blast E-value=9e-16, identity=82.47%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               277-430, 511167 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM107054.1|), 
blast E-value=9e-16, identity=82.47% 
               

               
               277-430, 689225 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB439561.1|), 
blast E-value=9e-16, identity=82.47% 
               

               
               277-430, 1234661 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN284895.1|), 
blast E-value=9e-16, identity=82.47% 
               

               
               277-430, 1240277 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN286192.1|), 
blast E-value=9e-16, identity=82.47% 
               

               
               277-430, 1266578 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN523120.1|), 
blast E-value=9e-16, identity=82.47% 
               

               
               277-430, LB02751.CR_K10 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE348612.1|), 
blast E-value=9e-16, identity=82.47%

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               2-176, gnl|bosTau2|chr3 (77143369-77143541)
               

               
               2-176, gnl|Hg17|chr1 (35850025-35849856)
               


               
               235-866, gnl|bosTau2|chr3 (77143551-77144152)
               

               
               235-866, gnl|Hg17|chr1 (35849846-35849224)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-176, gnl|bosTau2|chr3 (77143369-77143541)
               

               
               2-176, gnl|Hg17|chr1 (35850025-35849856)
               


               
               235-866, gnl|bosTau2|chr3 (77143551-77144152)
               

               
               235-866, gnl|Hg17|chr1 (35849846-35849224)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fhi (0.169578)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	277-430, 511167 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BM107054.1\|), blast E-value=9e-16, identity=82.47%
	277-430, 689225 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb\|CB439561.1\|), blast E-value=9e-16, identity=82.47%
	277-430, 1234661 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN284895.1\|), blast E-value=9e-16, identity=82.47%
	277-430, 1240277 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN286192.1\|), blast E-value=9e-16, identity=82.47%
	277-430, 1266578 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN523120.1\|), blast E-value=9e-16, identity=82.47%
	277-430, LB02751.CR_K10 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|EE348612.1\|), blast E-value=9e-16, identity=82.47%

	2-176, gnl\|bosTau2\|chr3 (77143369-77143541)
	2-176, gnl\|Hg17\|chr1 (35850025-35849856)

	235-866, gnl\|bosTau2\|chr3 (77143551-77144152)
	235-866, gnl\|Hg17\|chr1 (35849846-35849224)