Ss1.1-Pig2-64G22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCGGTGGATCCGAGGGCGCAGATGGAGAAGAGGAAGGTGCTGATGGGGTCAGCTGCCTT GTATTGAGGCTTGAAGTAGATGAGGACGGAGGCAGCCAGCACCCCAAGGCTCTGCAGGAG GTCCCCCAGCACATGCACAAAGGCCGCCCGGACGCTGGTGTTCCCCAGGGGCAGGGCCTC CCCAGGCCCCTCCTCCAGCGGTGCATACTCTGCCCCCCTAGACCCGTGGCTGTGGGGGGG CCCAGCCTGGTGCAGCACAAAGGCCATTAGCAGATTGGCACAGACTGCGATGCTGGCGGT CAGCAGCATGGCACCCCCCTCGATGTGGTAGTCGCTGTGCAGCAGGCGGATGAAAGCCAG GTACAGGAGGATGCCAGTGACCATCCAGAGGGAGACCACAGAGGCCAGAGCCCCCAGAGT CTCTGAACGGTGCCAGCCAAAGGTCATGGTGCGGGTGGCTGGACGGGTAGAGAGCCAAAG GGAGAAGAGGCTGCCCATCATGCTGCCCACGTCTGCCAACAGGTGGGCTGCATCGGTCAT AATGGCCAGGCTGTGCGCCAAATACCCACCGACGACCTCCCCGGCCATGAAGACGCAGCA CACAGCACAGGCGGCGCACAGCTGCCTCTGCGCCTGCAGCCTCTCAGGGGTGAGACCCGG CTGGGGCAGGGGGTCCTTGTGGCAGTGCTGGAAGGACATCTCTGTGGGTTTGGGCTCCTC GGGGACGGGCTCTGAGGCCTCTGTGAAGAGACTCTTCAAACGCAGGCCGCCACCAATGCC GCCACGGTCTCGGGGGCTCACCAGGCGAGTGGTCTCCGAGCCCCCAGCGGTGGGAGAGGG CTCCATTTCCCCGCGGCCCCGGCCGTCTAGGCCCCAGTGAGGGAGGGAGAGGCGGGGCCG ATCCCGAGCCAAGTCCGAGCGGCCAGCCGACCCCCGGGATCCCCTCACGGCCGCGGGGCC ACCAGAGTGGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCGGTGGATCCGAGGGCGCAGATGGAGAAGAGGAAGGTGCTGATGGGGTCAGCTGCCTT GTATTGAGGCTTGAAGTAGATGAGGACGGAGGCAGCCAGCACCCCAAGGCTCTGCAGGAG GTCCCCCAGCACATGCACAAAGGCCGCCCGGACGCTGGTGTTCCCCAGGGGCAGGGCCTC CCCAGGCCCCTCCTCCAGCGGTGCATACTCTGCCCCCCTAGACCCGTGGCTGTGGGGGGG CCCAGCCTGGTGCAGCACAAAGGCCATTAGCAGATTGGCACAGACTGCGATGCTGGCGGT CAGCAGCATGGCACCCCCCTCGATGTGGTAGTCGCTGTGCAGCAGGCGGATGAAAGCCAG GTACAGGAGGATGCCAGTGACCATCCAGAGGGAGACCACAGAGGCCAGAGCCCCCAGAGT CTCTGAACGGTGCCAGCCAAAGGTCATGGTGCGGGTGGCTGGACGGGTAGAGAGCCAAAG GGAGAAGAGGCTGCCCATCATGCTGCCCACGTCTGCCAACAGGTGGGCTGCATCGGTCAT AATGGCCAGGCTGTGCGCCAAATACCCACCGACGACCTCCCCGGCCATGAAGACGCAGCA CACAGCACAGGCGGCGCACAGCTGCCTCTGCGCCTGCAGCCTCTCAGGGGTGAGACCCGG CTGGGGCAGGGGGTCCTTGTGGCAGTGCTGGAAGGACATCTCTGTGGGTTTGGGCTCCTC GGGGACGGGCTCTGAGGCCTCTGTGAAGAGACTCTTCAAACGCAGGCCGCCACCAATGCC GCCACGGTCTCGGGGGCTCACCAGGCGAGTGGTCTCCGAGCCCCCAGCGGTGGGAGAGGG CTCCATTTCCCCGCGGCCCCGGCCGTCTAGGCCCCAGTGAGGGAGGGAGAGGCGGGGCCG ATCCCGAGCCAAGTCCGAGCGGCCAGCCGACCCCCGGGATCCCCTCACGGCCGCGGGGCC ACCAGAGTGGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 269-427, - strand, RNAz p=0.678257 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 269-427, - strand, RNAz p=0.678257 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 14-268, gnl|bosTau2|chr11 (52069115-52068861) | |
| 14-268, gnl|Hg17|chr2 (27391617-27391871) | |
| 14-268, gnl|Mm7|chr5 (30121072-30121322) | |
| 269-430, gnl|bosTau2|chr11 (52068171-52068010) | |
| 269-430, gnl|canFam2|chr17 (24214768-24214958) | |
| 269-430, gnl|danRer3|chr20 (45571044-45571209) | |
| 269-430, gnl|dasNov1|scaffold_50243 (2128-2278) | |
| 269-430, gnl|echTel1|scaffold_310566 (156030-156232) | |
| 269-430, gnl|fr1|chrUn (230386602-230386796) | |
| 269-430, gnl|galGal2|chrUn (89572012-89572192) | |
| 269-430, gnl|hg17|chr2 (27392400-27392596) | |
| 269-430, gnl|Hg17|chr2 (27392424-27392591) | |
| 269-430, gnl|loxAfr1|scaffold_51796 (23109-22919) | |
| 269-430, gnl|mm7|chr5 (30121811-30122000) | |
| 269-430, gnl|Mm7|chr5 (30121835-30121995) | |
| 269-430, gnl|oryCun1|scaffold_203841 (93114-92924) | |
| 269-430, gnl|panTro1|chr12 (28331487-28331682) | |
| 269-430, gnl|rheMac2|chr13 (27226415-27226611) | |
| 269-430, gnl|rn3|chr6 (25264891-25264702) | |
| 269-430, gnl|tetNig1|chr14 (9231297-9231473) | |
| 269-430, gnl|xenTro1|scaffold_1743 (71118-70928) | |
| 752-969, gnl|bosTau2|chr11 (52063222-52063004) | |
| 752-969, gnl|canFam2|chr17 (24219286-24219793) | |
| 752-969, gnl|dasNov1|scaffold_9836 (4556-4255) | |
| 752-969, gnl|hg17|chr2 (27396974-27397483) | |
| 752-969, gnl|Hg17|chr2 (27397331-27397548) | |
| 752-969, gnl|mm7|chr5 (30125476-30125929) | |
| 752-969, gnl|Mm7|chr5 (30125779-30125987) | |
| 752-969, gnl|monDom2|scaffold_1 (149025438-149024849) | |
| 752-969, gnl|oryCun1|scaffold_211978 (4388-3956) | |
| 752-969, gnl|panTro1|chr12 (28336132-28336641) | |
| 752-969, gnl|rheMac2|chr13 (27231685-27232195) | |
| 752-969, gnl|rn3|chr6 (25261177-25260721) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 14-268, gnl|bosTau2|chr11 (52069115-52068861) | |
| 14-268, gnl|Hg17|chr2 (27391617-27391871) | |
| 14-268, gnl|Mm7|chr5 (30121072-30121322) | |
| 269-430, gnl|bosTau2|chr11 (52068171-52068010) | |
| 269-430, gnl|canFam2|chr17 (24214768-24214958) | |
| 269-430, gnl|danRer3|chr20 (45571044-45571209) | |
| 269-430, gnl|dasNov1|scaffold_50243 (2128-2278) | |
| 269-430, gnl|echTel1|scaffold_310566 (156030-156232) | |
| 269-430, gnl|fr1|chrUn (230386602-230386796) | |
| 269-430, gnl|galGal2|chrUn (89572012-89572192) | |
| 269-430, gnl|hg17|chr2 (27392400-27392596) | |
| 269-430, gnl|Hg17|chr2 (27392424-27392591) | |
| 269-430, gnl|loxAfr1|scaffold_51796 (23109-22919) | |
| 269-430, gnl|mm7|chr5 (30121811-30122000) | |
| 269-430, gnl|Mm7|chr5 (30121835-30121995) | |
| 269-430, gnl|oryCun1|scaffold_203841 (93114-92924) | |
| 269-430, gnl|panTro1|chr12 (28331487-28331682) | |
| 269-430, gnl|rheMac2|chr13 (27226415-27226611) | |
| 269-430, gnl|rn3|chr6 (25264891-25264702) | |
| 269-430, gnl|tetNig1|chr14 (9231297-9231473) | |
| 269-430, gnl|xenTro1|scaffold_1743 (71118-70928) | |
| 752-969, gnl|bosTau2|chr11 (52063222-52063004) | |
| 752-969, gnl|canFam2|chr17 (24219286-24219793) | |
| 752-969, gnl|dasNov1|scaffold_9836 (4556-4255) | |
| 752-969, gnl|hg17|chr2 (27396974-27397483) | |
| 752-969, gnl|Hg17|chr2 (27397331-27397548) | |
| 752-969, gnl|mm7|chr5 (30125476-30125929) | |
| 752-969, gnl|Mm7|chr5 (30125779-30125987) | |
| 752-969, gnl|monDom2|scaffold_1 (149025438-149024849) | |
| 752-969, gnl|oryCun1|scaffold_211978 (4388-3956) | |
| 752-969, gnl|panTro1|chr12 (28336132-28336641) | |
| 752-969, gnl|rheMac2|chr13 (27231685-27232195) | |
| 752-969, gnl|rn3|chr6 (25261177-25260721) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |