Ss1.1-Pig2-64J13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTTGTCATGGGCATGAAGAGGGAAGCTGTGCAAGAAGAAAGGCAGAGAAGCCGGGAGAG GGCTGAGAGTGAGGCCGAATGTGCCAGTAGTGGCCATGAAGATATGCCTGTGGAGAGGAT TCTGGAAGCTGAACTTGCTGTTGAACCAAAGACGGAATCCTATGGTGACATGAACATGGA GAATTCGACGAATGACCCTGTCACCAACATATGCCACGCTGCTGATAAGCAGCTCTTTAC TCTCGTTGAATGGGCCAAGCGTATTCCCCACTTCTCTGACCTCACCTTGGAGGACCAGGT CATTCTGCTCCGGGCAGGGTGGAATGAATTGCTGATCGCCTCCTTTTCCCACCGATCGGT TTCTGTGCAGGACGGCATCCTCCTGGCCACGGGTTTACACGTCCACCGGAGCAGTGCCCA CAGTGCTGGGGTTGGCTCCATCTTTGACAGAGTCCTGACTGAGCTGGTCTCCAAAATGAA AGACATGCAGATGGATAAGTCGGAGCTGGGGTGCCTGCGAGCCATCGTGCTATTTAACCC AGATGCCAAGGGTCTGTCCAACCCCTCAGAGGTAGAGACTCTGCGAGAGAAGGTTTATGC CACCCTCGAGGCCTACACCAAGCAGAAGTATCCAGAACAACCGGGCAGGTTTGCCAAGCT GCTGCTGCGCCTCCCAGCCCTGCGCTCCATCGGCTTGAAGTGCCTGGAGCACCTTTTCTT CTTCAAGCTCATCGGGGACACGCCCATTGACACCTTCCTCATGGAGATGTTGGAGACCCC GCTGCAGATCACATGAGCCCCACCAGCCACAGCCTCCCCACAGAGGACCAGCCTGGGCAG GTGTGTGTGGACCCCCATCCTGCACACGTTCCTCCACCTCCCACCCTGACCCCTTCCCGT TCCCCAAACGTGATGCTTATAATAAAGAAATCTTTCTACATACACGACTTTTTATAGGTG GAGTTTTGTATAGATGTCAAAGGTGACCTTCTTTGCTATCTAAGGGACTGGGGATCTTTC TGGAAGTTCTTGGGAAAACTAACCAAGCCTCTGTACATATAATTGGTTTAAATTATTTTT TCATTTGCCTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTTGTCATGGGCATGAAGAGGGAAGCTGTGCAAGAAGAAAGGCAGAGAAGCCGGGAGAG GGCTGAGAGTGAGGCCGAATGTGCCAGTAGTGGCCATGAAGATATGCCTGTGGAGAGGAT TCTGGAAGCTGAACTTGCTGTTGAACCAAAGACGGAATCCTATGGTGACATGAACATGGA GAATTCGACGAATGACCCTGTCACCAACATATGCCACGCTGCTGATAAGCAGCTCTTTAC TCTCGTTGAATGGGCCAAGCGTATTCCCCACTTCTCTGACCTCACCTTGGAGGACCAGGT CATTCTGCTCCGGGCAGGGTGGAATGAATTGCTGATCGCCTCCTTTTCCCACCGATCGGT TTCTGTGCAGGACGGCATCCTCCTGGCCACGGGTTTACACGTCCACCGGAGCAGTGCCCA CAGTGCTGGGGTTGGCTCCATCTTTGACAGAGTCCTGACTGAGCTGGTCTCCAAAATGAA AGACATGCAGATGGATAAGTCGGAGCTGGGGTGCCTGCGAGCCATCGTGCTATTTAACCC AGATGCCAAGGGTCTGTCCAACCCCTCAGAGGTAGAGACTCTGCGAGAGAAGGTTTATGC CACCCTCGAGGCCTACACCAAGCAGAAGTATCCAGAACAACCGGGCAGGTTTGCCAAGCT GCTGCTGCGCCTCCCAGCCCTGCGCTCCATCGGCTTGAAGTGCCTGGAGCACCTTTTCTT CTTCAAGCTCATCGGGGACACGCCCATTGACACCTTCCTCATGGAGATGTTGGAGACCCC GCTGCAGATCACATGAGCCCCACCAGCCACAGCCTCCCCACAGAGGACCAGCCTGGGCAG GTGTGTGTGGACCCCCATCCTGCACACGTTCCTCCACCTCCCACCCTGACCCCTTCCCGT TCCCCAAACGTGATGCTTATAATAAAGAAATCTTTCTACATACACGACTTTTTATAGGTG GAGTTTTGTATAGATGTCAAAGGTGACCTTCTTTGCTATCTAAGGGACTGGGGATCTTTC TGGAAGTTCTTGGGAAAACTAACCAAGCCTCTGTACATATAATTGGTTTAAATTATTTTT TCATTTGCCTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 64-309, - strand, RNAz p=0.950867 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 64-309, - strand, RNAz p=0.950867 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 25-187, gnl|bosTau2|chr3 (4310679-4310841) | |
| 25-187, gnl|canFam2|chr38 (20902789-20902569) | |
| 25-187, gnl|danRer3|chr20 (41101343-41101542) | |
| 25-187, gnl|echTel1|scaffold_270205 (2686-2902) | |
| 25-187, gnl|fr1|chrUn (63676476-63676692) | |
| 25-187, gnl|galGal2|chr8 (5184291-5184106) | |
| 25-187, gnl|hg17|chr1 (162111819-162112037) | |
| 25-187, gnl|Hg17|chr1 (162112006-162111844) | |
| 25-187, gnl|loxAfr1|scaffold_24101 (13630-13847) | |
| 25-187, gnl|mm7|chr1 (167607930-167607714) | |
| 25-187, gnl|Mm7|chr1 (167607741-167607903) | |
| 25-187, gnl|monDom2|scaffold_16 (15709369-15709599) | |
| 25-187, gnl|oryCun1|scaffold_215205 (204903-204685) | |
| 25-187, gnl|panTro1|chr1 (144357297-144357514) | |
| 25-187, gnl|rheMac2|chr1 (195245976-195246177) | |
| 25-187, gnl|rn3|chr13 (83302555-83302339) | |
| 25-187, gnl|tetNig1|chr8 (6303943-6303755) | |
| 25-187, gnl|xenTro1|scaffold_160 (741533-741321) | |
| 191-318, gnl|bosTau2|chr11 (85119646-85119773) | |
| 191-318, gnl|canFam2|chr9 (53906607-53906760) | |
| 191-318, gnl|danRer3|chr20 (42534079-42534220) | |
| 191-318, gnl|dasNov1|scaffold_39224 (7292-7448) | |
| 191-318, gnl|echTel1|scaffold_270205 (2606-2457) | |
| 191-318, gnl|fr1|chrUn (63676151-63676000) | |
| 191-318, gnl|galGal2|chr17 (3079368-3079219) | |
| 191-318, gnl|hg17|chr9 (134539449-134539606) | |
| 191-318, gnl|Hg17|chr9 (134539470-134539597) | |
| 191-318, gnl|loxAfr1|scaffold_138635 (1720-1872) | |
| 191-318, gnl|mm7|chr2 (27759607-27759762) | |
| 191-318, gnl|Mm7|chr2 (27759626-27759753) | |
| 191-318, gnl|monDom2|scaffold_51 (11448879-11449035) | |
| 191-318, gnl|oryCun1|scaffold_215205 (204978-205128) | |
| 191-318, gnl|panTro1|chr11 (119415374-119415529) | |
| 191-318, gnl|rheMac2|chr4 (32910498-32910341) | |
| 191-318, gnl|rn3|chr3 (6682268-6682423) | |
| 191-318, gnl|tetNig1|chrUn_random (10506536-10506686) | |
| 191-318, gnl|xenTro1|scaffold_95 (1689979-1689827) | |
| 447-567, gnl|bosTau2|chr3 (4313773-4313892) | |
| 447-567, gnl|Hg17|chr1 (162109217-162109079) | |
| 447-567, gnl|Mm7|chr1 (167611214-167611351) | |
| 645-800, gnl|bosTau2|chr11 (85126368-85126523) | |
| 645-800, gnl|canFam2|chr9 (53913491-53913652) | |
| 645-800, gnl|danRer3|chr20 (42541526-42541675) | |
| 645-800, gnl|dasNov1|scaffold_39224 (8545-8706) | |
| 645-800, gnl|echTel1|scaffold_220816 (6105-6276) | |
| 645-800, gnl|fr1|chrUn (63675199-63675048) | |
| 645-800, gnl|galGal2|chr17 (3073087-3072930) | |
| 645-800, gnl|hg17|chr9 (134554245-134554410) | |
| 645-800, gnl|Hg17|chr9 (134554254-134554409) | |
| 645-800, gnl|loxAfr1|scaffold_24101 (4047-3887) | |
| 645-800, gnl|mm7|chr2 (27766839-27767004) | |
| 645-800, gnl|Mm7|chr2 (27766848-27767003) | |
| 645-800, gnl|monDom2|scaffold_51 (11468617-11468780) | |
| 645-800, gnl|oryCun1|scaffold_166833 (6711-6546) | |
| 645-800, gnl|panTro1|chr11 (119430141-119430306) | |
| 645-800, gnl|rheMac2|chr15 (3859143-3858978) | |
| 645-800, gnl|rn3|chr3 (6689364-6689529) | |
| 645-800, gnl|tetNig1|chrUn_random (10510414-10510564) | |
| 645-800, gnl|xenTro1|scaffold_95 (1681642-1681482) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 25-187, gnl|bosTau2|chr3 (4310679-4310841) | |
| 25-187, gnl|canFam2|chr38 (20902789-20902569) | |
| 25-187, gnl|danRer3|chr20 (41101343-41101542) | |
| 25-187, gnl|echTel1|scaffold_270205 (2686-2902) | |
| 25-187, gnl|fr1|chrUn (63676476-63676692) | |
| 25-187, gnl|galGal2|chr8 (5184291-5184106) | |
| 25-187, gnl|hg17|chr1 (162111819-162112037) | |
| 25-187, gnl|Hg17|chr1 (162112006-162111844) | |
| 25-187, gnl|loxAfr1|scaffold_24101 (13630-13847) | |
| 25-187, gnl|mm7|chr1 (167607930-167607714) | |
| 25-187, gnl|Mm7|chr1 (167607741-167607903) | |
| 25-187, gnl|monDom2|scaffold_16 (15709369-15709599) | |
| 25-187, gnl|oryCun1|scaffold_215205 (204903-204685) | |
| 25-187, gnl|panTro1|chr1 (144357297-144357514) | |
| 25-187, gnl|rheMac2|chr1 (195245976-195246177) | |
| 25-187, gnl|rn3|chr13 (83302555-83302339) | |
| 25-187, gnl|tetNig1|chr8 (6303943-6303755) | |
| 25-187, gnl|xenTro1|scaffold_160 (741533-741321) | |
| 191-318, gnl|bosTau2|chr11 (85119646-85119773) | |
| 191-318, gnl|canFam2|chr9 (53906607-53906760) | |
| 191-318, gnl|danRer3|chr20 (42534079-42534220) | |
| 191-318, gnl|dasNov1|scaffold_39224 (7292-7448) | |
| 191-318, gnl|echTel1|scaffold_270205 (2606-2457) | |
| 191-318, gnl|fr1|chrUn (63676151-63676000) | |
| 191-318, gnl|galGal2|chr17 (3079368-3079219) | |
| 191-318, gnl|hg17|chr9 (134539449-134539606) | |
| 191-318, gnl|Hg17|chr9 (134539470-134539597) | |
| 191-318, gnl|loxAfr1|scaffold_138635 (1720-1872) | |
| 191-318, gnl|mm7|chr2 (27759607-27759762) | |
| 191-318, gnl|Mm7|chr2 (27759626-27759753) | |
| 191-318, gnl|monDom2|scaffold_51 (11448879-11449035) | |
| 191-318, gnl|oryCun1|scaffold_215205 (204978-205128) | |
| 191-318, gnl|panTro1|chr11 (119415374-119415529) | |
| 191-318, gnl|rheMac2|chr4 (32910498-32910341) | |
| 191-318, gnl|rn3|chr3 (6682268-6682423) | |
| 191-318, gnl|tetNig1|chrUn_random (10506536-10506686) | |
| 191-318, gnl|xenTro1|scaffold_95 (1689979-1689827) | |
| 447-567, gnl|bosTau2|chr3 (4313773-4313892) | |
| 447-567, gnl|Hg17|chr1 (162109217-162109079) | |
| 447-567, gnl|Mm7|chr1 (167611214-167611351) | |
| 645-800, gnl|bosTau2|chr11 (85126368-85126523) | |
| 645-800, gnl|canFam2|chr9 (53913491-53913652) | |
| 645-800, gnl|danRer3|chr20 (42541526-42541675) | |
| 645-800, gnl|dasNov1|scaffold_39224 (8545-8706) | |
| 645-800, gnl|echTel1|scaffold_220816 (6105-6276) | |
| 645-800, gnl|fr1|chrUn (63675199-63675048) | |
| 645-800, gnl|galGal2|chr17 (3073087-3072930) | |
| 645-800, gnl|hg17|chr9 (134554245-134554410) | |
| 645-800, gnl|Hg17|chr9 (134554254-134554409) | |
| 645-800, gnl|loxAfr1|scaffold_24101 (4047-3887) | |
| 645-800, gnl|mm7|chr2 (27766839-27767004) | |
| 645-800, gnl|Mm7|chr2 (27766848-27767003) | |
| 645-800, gnl|monDom2|scaffold_51 (11468617-11468780) | |
| 645-800, gnl|oryCun1|scaffold_166833 (6711-6546) | |
| 645-800, gnl|panTro1|chr11 (119430141-119430306) | |
| 645-800, gnl|rheMac2|chr15 (3859143-3858978) | |
| 645-800, gnl|rn3|chr3 (6689364-6689529) | |
| 645-800, gnl|tetNig1|chrUn_random (10510414-10510564) | |
| 645-800, gnl|xenTro1|scaffold_95 (1681642-1681482) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| mas (0.210305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| nco (0.161734) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| nco (0.161734) |