Non-Coding RNA Search

Ss1.1-Pig2-64K01.5

Sequence:


               
               CTGCTCCGCTACAAGCGCATCCAGCGCAAGTTTGCTGCCTGCTAGGAGCCTCCTGCCGTC
CGGGACCCTGCCCCCAGGGGCTAAAGGGCCAGCCGGTGCTCACTCTGGTCCCCTGAACTC
CAGGAAGGGTAGAGAGGCTGCGTCTGCTCAGGGCCCGGGCACCAGTCTCCCTCCCATCTT
TCTCCTTCCCCCGGCGTCTGGAAAGGGTATGGTTCAAAGCAGGGTCTACACCCAAGGCCA
CACCCTCTCACCTCTGCAGTCTGGCAAGTGGGCAAAACTGTTTCCAAGGCAGATGACAGC
ATCGAAGCCACCCATTGGTGACTTGGGCACATCTTTGTCTAGAGTCATCCAGTTGGCTTC
TTCAATGACTGGGGGCCAGGAAAGGGAAGAGGGAACAGGCTGGTACCACAGTACAAGCAG
CACCCGTGTCCACCAAGTGCAGTCTTGCCTCTCTTTCCCCTTCTAGACACACACAGGGCC
TCCCCAGGGGAGGGGATCCCGAGGGAGGGGATCATCATGGACATGGAGGGTGAAGGAGAA
GAGGGGTCAGGGGAATAGGAAGCTGTGGTGGGGAAGGAGGGCCCTGTGCTTATGGGTTTC
TTTTGGGGGAGAAGGATAAGATACTATAAAGGTAATTAAAACTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCTCCGCTACAAGCGCATCCAGCGCAAGTTTGCTGCCTGCTAGGAGCCTCCTGCCGTC
CGGGACCCTGCCCCCAGGGGCTAAAGGGCCAGCCGGTGCTCACTCTGGTCCCCTGAACTC
CAGGAAGGGTAGAGAGGCTGCGTCTGCTCAGGGCCCGGGCACCAGTCTCCCTCCCATCTT
TCTCCTTCCCCCGGCGTCTGGAAAGGGTATGGTTCAAAGCAGGGTCTACACCCAAGGCCA
CACCCTCTCACCTCTGCAGTCTGGCAAGTGGGCAAAACTGTTTCCAAGGCAGATGACAGC
ATCGAAGCCACCCATTGGTGACTTGGGCACATCTTTGTCTAGAGTCATCCAGTTGGCTTC
TTCAATGACTGGGGGCCAGGAAAGGGAAGAGGGAACAGGCTGGTACCACAGTACAAGCAG
CACCCGTGTCCACCAAGTGCAGTCTTGCCTCTCTTTCCCCTTCTAGACACACACAGGGCC
TCCCCAGGGGAGGGGATCCCGAGGGAGGGGATCATCATGGACATGGAGGGTGAAGGAGAA
GAGGGGTCAGGGGAATAGGAAGCTGTGGTGGGGAAGGAGGGCCCTGTGCTTATGGGTTTC
TTTTGGGGGAGAAGGATAAGATACTATAAAGGTAATTAAAACTAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               422-540, - strand, RNAz p=0.980882

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               422-540, - strand, RNAz p=0.980882

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               85-616, gnl|bosTau2|chr23 (13020958-13020459)
               

               
               85-616, gnl|Hg17|chr6 (43038815-43038269)
               

               
               85-616, gnl|Mm7|chr17 (44855571-44856068)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-616, gnl|bosTau2|chr23 (13020958-13020459)
               

               
               85-616, gnl|Hg17|chr6 (43038815-43038269)
               

               
               85-616, gnl|Mm7|chr17 (44855571-44856068)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hea (0.204499)
               

               
               ute (0.132784)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               ute (0.132784)
               

               
               cty (0.10408)

	85-616, gnl\|bosTau2\|chr23 (13020958-13020459)
	85-616, gnl\|Hg17\|chr6 (43038815-43038269)
	85-616, gnl\|Mm7\|chr17 (44855571-44856068)