Non-Coding RNA Search

Ss1.1-Pig2-64N03.5

Sequence:


               
               CAGCCACCTGCTTACACATTTAGGGACTACAGTGCTCTCCTGTACATGAACGATGACTTT
GAAGGGGGAGAATTCATATTCACTGAGATGGATGCCAAGACTGTGACCGCTTCTATAAAA
CCAAAGTGTGGACGTATGATCAGCTTCTCATCTGGAGGAGAGAACCCGCATGGGGTGAAA
GCAGTCACCAAGGGCCAGAGGTGTGCTGTGGCTCTGTGGTTTACCTTGGACCCACTTTAT
AGAGAATTGGAGCGAATACAGGCTGATGAAGTGATCGCCATCCTGGATCAAGAACAACAA
GGGAAGCATGAACTGAATATCAACCCCAAAGATGAGCTATAAAAAATGAGAGAGTGTCCT
ATCAGCTATTTATTTAAATTGTTAATCTTATGAGAACCTTTTTTATTTTTGTACAGAGCC
GTGGTATAAGTTAACAGGTTAATAAGAGTCACCAGATCTCCCTTCTGCTCTTAAAGACCC
TCGCTTTGCCTCACTCAGTCTATCTGTCTTGGTTTTTCGTCAGGTCATTTCTCAAAGCCC
AGTCACAATGCCCGCCCCTGCCGCCACTGCCCCCAACACACATACAGTTCATTTGCTGCA
GATCCTAAAGCTCAAGCAGTAAGAATAAGCCTGTTCTTGTTCAAACTACAACTGTGCTCC
ACTTCTAAAGATAGCATGTGATTTGGACTCCGAAGGCCTTTCTGGCCCTGTGTTGTTTAG
TCCTGGTCTCTCCCAGGGCTGGCAGCCCTGGGTTTGACTCTGGGGAGTCCATGGCAAGAT
TGGAACTGCATCAAGTGGGGGTCTTTGGGCCCCCAGGCTCTGTGGAGGAACTGCTGTGAT
GAGTACTGCGTAAGACGGAGGGGTTCGGCCTTTCCAGGGCAAGGGTGGTGCTTTCGATTC
CAGTATTTACAGCGGACAGAACACCTAACACTGGAAGCTTCCATCCCCCCTCCCCACCAT
GGTGCGCCAGAAAAGATGGCCCTGGGAGTTGTGTCTTTAAAAAGGTGGTGTGGGGGAGTT
CCCATCGTGGCCCAGTGGTTAAGGAATCAGACTAGGAACCAGGAGTTTGCGGGTTCGATC
CCTGGCCTTGCTCAGTGGGTTAAGGATCTGGCATTGCCGTGATCTGTGGTGTACGTTGCA
GTTGCGACTTGGATCCTGCGTTGCTGTGGCTGTGGTTTAGGCCGGCGGCTACAGCTCTGA
TTCGATCCCCTAGCCTGGGACCCTCCATGTGCCGTGGGTGTGGCTCTAGAAAAGACAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCACCTGCTTACACATTTAGGGACTACAGTGCTCTCCTGTACATGAACGATGACTTT
GAAGGGGGAGAATTCATATTCACTGAGATGGATGCCAAGACTGTGACCGCTTCTATAAAA
CCAAAGTGTGGACGTATGATCAGCTTCTCATCTGGAGGAGAGAACCCGCATGGGGTGAAA
GCAGTCACCAAGGGCCAGAGGTGTGCTGTGGCTCTGTGGTTTACCTTGGACCCACTTTAT
AGAGAATTGGAGCGAATACAGGCTGATGAAGTGATCGCCATCCTGGATCAAGAACAACAA
GGGAAGCATGAACTGAATATCAACCCCAAAGATGAGCTATAAAAAATGAGAGAGTGTCCT
ATCAGCTATTTATTTAAATTGTTAATCTTATGAGAACCTTTTTTATTTTTGTACAGAGCC
GTGGTATAAGTTAACAGGTTAATAAGAGTCACCAGATCTCCCTTCTGCTCTTAAAGACCC
TCGCTTTGCCTCACTCAGTCTATCTGTCTTGGTTTTTCGTCAGGTCATTTCTCAAAGCCC
AGTCACAATGCCCGCCCCTGCCGCCACTGCCCCCAACACACATACAGTTCATTTGCTGCA
GATCCTAAAGCTCAAGCAGTAAGAATAAGCCTGTTCTTGTTCAAACTACAACTGTGCTCC
ACTTCTAAAGATAGCATGTGATTTGGACTCCGAAGGCCTTTCTGGCCCTGTGTTGTTTAG
TCCTGGTCTCTCCCAGGGCTGGCAGCCCTGGGTTTGACTCTGGGGAGTCCATGGCAAGAT
TGGAACTGCATCAAGTGGGGGTCTTTGGGCCCCCAGGCTCTGTGGAGGAACTGCTGTGAT
GAGTACTGCGTAAGACGGAGGGGTTCGGCCTTTCCAGGGCAAGGGTGGTGCTTTCGATTC
CAGTATTTACAGCGGACAGAACACCTAACACTGGAAGCTTCCATCCCCCCTCCCCACCAT
GGTGCGCCAGAAAAGATGGCCCTGGGAGTTGTGTCTTTAAAAAGGTGGTGTGGGGGAGTT
CCCATCGTGGCCCAGTGGTTAAGGAATCAGACTAGGAACCAGGAGTTTGCGGGTTCGATC
CCTGGCCTTGCTCAGTGGGTTAAGGATCTGGCATTGCCGTGATCTGTGGTGTACGTTGCA
GTTGCGACTTGGATCCTGCGTTGCTGTGGCTGTGGTTTAGGCCGGCGGCTACAGCTCTGA
TTCGATCCCCTAGCCTGGGACCCTCCATGTGCCGTGGGTGTGGCTCTAGAAAAGACAAAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               109-250, gnl|bosTau2|chr1 (47214312-47214453)
               

               
               109-250, gnl|Hg17|chr3 (191164589-191164448)
               

               
               109-250, gnl|Mm7|chr16 (25627404-25627263)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-250, gnl|bosTau2|chr1 (47214312-47214453)
               

               
               109-250, gnl|Hg17|chr3 (191164589-191164448)
               

               
               109-250, gnl|Mm7|chr16 (25627404-25627263)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               nje (0.33184)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.33184)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

	109-250, gnl\|bosTau2\|chr1 (47214312-47214453)
	109-250, gnl\|Hg17\|chr3 (191164589-191164448)
	109-250, gnl\|Mm7\|chr16 (25627404-25627263)

	nje (0.33184)
	csp (0.161186)
	lun (0.150489)
	lnt (0.142308)
	ute (0.132784)
	ese (0.126502)
	eep (0.122564)
	cty (0.10408)