Non-Coding RNA Search

Ss1.1-Pig2-65A03.5

Sequence:


               
               AATTTTCACTTTACATTTTAAATGCCAGACTTTACAAAAATAGCTGATCTTTATTAATTG
CATCCTAATTAGAAATGTTTGTTCTCCTCCATGTCTTCAACCTTATAAATAAGTTTTTAT
TTTAATATGCTTAAAGAAAATCCTTGCACTACAACCATTTCATAAAATTCAAGATTCTCA
CATTGAAGGTTTTGTATTGGAAGAAATACTACTGGTTTTTAAAAAGCAAAGCTTAATAGA
ATTATTAGCTTTTCTTGAGACAGCTTTCTCTGTGTCCTCATTACTCTGCTCTGTGTGAGT
GTTGCTATAATTTGTGAAATATTGACTGAGCCCTTCACTTATCTTTTCTAAAGCAGCACC
TTTGGACACCTCATTCTGGGAAGCCTGCTCGAGTCATAGTAAAGGACACACAGATTTGTG
TGGGGAGAAGTGGTAAAAATGGAGAATTTTGTCTTAATTACATGAAACTAAGCTTTAAAA
TACTTTATGACAAATTATTTGAGCTGCATAATCTAAACATGTCAAACGTTCAGTGGGACT
ATTTTTATATATGTATATGTGGTTGTAGGTCATAACATTTCAGTTTATAATATAAATTGT
TATTTCAGTTTATAAGCTATCTCTCAGAAAAGACTAGCTCTTTTGAGAATACATAATTTA
AAGTTTTAGACTGAAGTAAAACACAACATAGATACATAGTGTAAATTAGATATAAATTGA
GGGCTATATGGCAGTAAAACTGCTATAGTGCCATTTTTCCTGTTTGCCTATTGTACATTT
TTTATTTTTTTTTTGTACTCTGAACATTTTTAGGGATCATACATTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTTCACTTTACATTTTAAATGCCAGACTTTACAAAAATAGCTGATCTTTATTAATTG
CATCCTAATTAGAAATGTTTGTTCTCCTCCATGTCTTCAACCTTATAAATAAGTTTTTAT
TTTAATATGCTTAAAGAAAATCCTTGCACTACAACCATTTCATAAAATTCAAGATTCTCA
CATTGAAGGTTTTGTATTGGAAGAAATACTACTGGTTTTTAAAAAGCAAAGCTTAATAGA
ATTATTAGCTTTTCTTGAGACAGCTTTCTCTGTGTCCTCATTACTCTGCTCTGTGTGAGT
GTTGCTATAATTTGTGAAATATTGACTGAGCCCTTCACTTATCTTTTCTAAAGCAGCACC
TTTGGACACCTCATTCTGGGAAGCCTGCTCGAGTCATAGTAAAGGACACACAGATTTGTG
TGGGGAGAAGTGGTAAAAATGGAGAATTTTGTCTTAATTACATGAAACTAAGCTTTAAAA
TACTTTATGACAAATTATTTGAGCTGCATAATCTAAACATGTCAAACGTTCAGTGGGACT
ATTTTTATATATGTATATGTGGTTGTAGGTCATAACATTTCAGTTTATAATATAAATTGT
TATTTCAGTTTATAAGCTATCTCTCAGAAAAGACTAGCTCTTTTGAGAATACATAATTTA
AAGTTTTAGACTGAAGTAAAACACAACATAGATACATAGTGTAAATTAGATATAAATTGA
GGGCTATATGGCAGTAAAACTGCTATAGTGCCATTTTTCCTGTTTGCCTATTGTACATTT
TTTATTTTTTTTTTGTACTCTGAACATTTTTAGGGATCATACATTCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               591-750, + strand, RNAz p=0.992692

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               591-750, + strand, RNAz p=0.992692

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               610-689, + strand, RNAmicro p=0.999645

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               610-689, + strand, RNAmicro p=0.999645

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-820, gnl|bosTau2|chrX (37706002-37705191)
               

               
               2-820, gnl|Hg17|chrX (23762972-23762171)
               

               
               2-820, gnl|Mm7|chrX (89662843-89663646)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-820, gnl|bosTau2|chrX (37706002-37705191)
               

               
               2-820, gnl|Hg17|chrX (23762972-23762171)
               

               
               2-820, gnl|Mm7|chrX (89662843-89663646)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fat (0.147427)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)

	2-820, gnl\|bosTau2\|chrX (37706002-37705191)
	2-820, gnl\|Hg17\|chrX (23762972-23762171)
	2-820, gnl\|Mm7\|chrX (89662843-89663646)