Non-Coding RNA Search

Ss1.1-Pig2-65B15.5

Sequence:


               
               TGGCTTTAAAGAGTGAGGGTTAATGCAAAATTACAAGGGAGAGATGGAAGTCCTAGTTTA
GTATCTAGATGGAAGGTACTAACATTTATTGAATGGTCATTACTGGCTATTTGTGGTTTT
AGGTGCTATACTTCAGAAGATAGAGTATTATGCCTATGATACAGAAGTGAGCAAACTGGC
TTAAATATCTTGCCTAGGGTTTCTCATATCTGAGCAGATTTAGAGTCATACCTTTCTGAC
TCAGAAGCATGCAGTGTCAGTATATATCCTGCCATGTAATGTGCCCAGGATATCTTTTAA
ACCAGGGCATTATCGGGTCCAGAAATCGTACCCTTTTTAATTCTTTGGTTTAAACATTTG
AACTATGTCAGCATATACTAAGGAAGTAGTAAATTAAATAAATCTGCAAAAAATTTTTCG
TAAAGAGCCAGATAGTGGATATTTTAGGCTTGCAGGTCAGATGGTCTCTGTAGTCGATAT
TCAGCTCTGCAGTAAAGTACGAGAGCAGCCACAGGCAAAATGTAAATAAATATAGCTATC
TTCCAATAAAACTTTATTTATAAAAATAGGCAGCAGGCCAGATTTGTCCTGTGGGCTGTG
CCTTAGCAACCTCTGAAGTAAATGCTATGGCTCTTGGTGTTTGAAAATGGAGCTGGATAC
ATTACTTGCATGCATGGTGCCTTTCCTGTTTCCAATATATTAGCAATTTAATAAAATGTT
TTGCTCCTTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCTTTAAAGAGTGAGGGTTAATGCAAAATTACAAGGGAGAGATGGAAGTCCTAGTTTA
GTATCTAGATGGAAGGTACTAACATTTATTGAATGGTCATTACTGGCTATTTGTGGTTTT
AGGTGCTATACTTCAGAAGATAGAGTATTATGCCTATGATACAGAAGTGAGCAAACTGGC
TTAAATATCTTGCCTAGGGTTTCTCATATCTGAGCAGATTTAGAGTCATACCTTTCTGAC
TCAGAAGCATGCAGTGTCAGTATATATCCTGCCATGTAATGTGCCCAGGATATCTTTTAA
ACCAGGGCATTATCGGGTCCAGAAATCGTACCCTTTTTAATTCTTTGGTTTAAACATTTG
AACTATGTCAGCATATACTAAGGAAGTAGTAAATTAAATAAATCTGCAAAAAATTTTTCG
TAAAGAGCCAGATAGTGGATATTTTAGGCTTGCAGGTCAGATGGTCTCTGTAGTCGATAT
TCAGCTCTGCAGTAAAGTACGAGAGCAGCCACAGGCAAAATGTAAATAAATATAGCTATC
TTCCAATAAAACTTTATTTATAAAAATAGGCAGCAGGCCAGATTTGTCCTGTGGGCTGTG
CCTTAGCAACCTCTGAAGTAAATGCTATGGCTCTTGGTGTTTGAAAATGGAGCTGGATAC
ATTACTTGCATGCATGGTGCCTTTCCTGTTTCCAATATATTAGCAATTTAATAAAATGTT
TTGCTCCTTAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               129-218, + strand, RNAz p=0.99751

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               129-218, + strand, RNAz p=0.99751

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-218, gnl|bosTau2|chr2 (75181118-75180901)
               

               
               1-218, gnl|canFam2|chr2 (72903316-72902775)
               

               
               1-218, gnl|dasNov1|scaffold_34899 (5135-4620)
               

               
               1-218, gnl|echTel1|scaffold_302436 (23363-23901)
               

               
               1-218, gnl|hg17|chr1 (31104911-31105437)
               

               
               1-218, gnl|Hg17|chr1 (31105235-31104990)
               

               
               1-218, gnl|loxAfr1|scaffold_6828 (62934-63475)
               

               
               1-218, gnl|mm7|chr4 (129969991-129969575)
               

               
               1-218, gnl|panTro1|chr1 (31782333-31782859)
               

               
               1-218, gnl|rheMac2|chr1 (33731312-33731837)
               

               
               1-218, gnl|rn3|chr5 (149569556-149569991)
               


               
               251-731, gnl|bosTau2|chr2 (75180893-75180422)
               

               
               251-731, gnl|Hg17|chr1 (31104978-31104234)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-218, gnl|bosTau2|chr2 (75181118-75180901)
               

               
               1-218, gnl|canFam2|chr2 (72903316-72902775)
               

               
               1-218, gnl|dasNov1|scaffold_34899 (5135-4620)
               

               
               1-218, gnl|echTel1|scaffold_302436 (23363-23901)
               

               
               1-218, gnl|hg17|chr1 (31104911-31105437)
               

               
               1-218, gnl|Hg17|chr1 (31105235-31104990)
               

               
               1-218, gnl|loxAfr1|scaffold_6828 (62934-63475)
               

               
               1-218, gnl|mm7|chr4 (129969991-129969575)
               

               
               1-218, gnl|panTro1|chr1 (31782333-31782859)
               

               
               1-218, gnl|rheMac2|chr1 (33731312-33731837)
               

               
               1-218, gnl|rn3|chr5 (149569556-149569991)
               


               
               251-731, gnl|bosTau2|chr2 (75180893-75180422)
               

               
               251-731, gnl|Hg17|chr1 (31104978-31104234)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               isp (0.150376)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)

	1-218, gnl\|bosTau2\|chr2 (75181118-75180901)
	1-218, gnl\|canFam2\|chr2 (72903316-72902775)
	1-218, gnl\|dasNov1\|scaffold_34899 (5135-4620)
	1-218, gnl\|echTel1\|scaffold_302436 (23363-23901)
	1-218, gnl\|hg17\|chr1 (31104911-31105437)
	1-218, gnl\|Hg17\|chr1 (31105235-31104990)
	1-218, gnl\|loxAfr1\|scaffold_6828 (62934-63475)
	1-218, gnl\|mm7\|chr4 (129969991-129969575)
	1-218, gnl\|panTro1\|chr1 (31782333-31782859)
	1-218, gnl\|rheMac2\|chr1 (33731312-33731837)
	1-218, gnl\|rn3\|chr5 (149569556-149569991)

	251-731, gnl\|bosTau2\|chr2 (75180893-75180422)
	251-731, gnl\|Hg17\|chr1 (31104978-31104234)