Non-Coding RNA Search

Ss1.1-Pig2-65I12.5

Sequence:


               
               GCTCCTTCATGCCACACACATCCCCCCCCACCCCGACCCCGTTCTTTCCATCTTCTCGCC
GAGGGCTCCTGGCTCTGGGNTTCCTCTTGGCCCATCTCACTTCCTGAAAACAGCACTGTA
GAGCACTGCTTATCTCGATGGAGCTCGAGTAGCCCTCTGGAGGTGGGGGAACTGAGAGCC
GTGGCACTTTCACATTCGGCCCACACAGAACTGTCCTCCAGGCTTCTGGGAACTCGGGGA
CGTGTAGCCCATGTCGGGGCTGGAAGTGATGGCCCGGTGATGGGCTCTCTTTCAAGAGAG
GGGGTTCCACCAGCGCAGAGAAGGAATGGGCCAGTGGTGAGTTCTGGACTGCAGCTGCTG
CCCCTGGACTCTGGCAAGATGTCGGGCAAGAGCTAGGCTCCCTGGTCCACGCGGATCCTG
CGGGCACATCTGTCCCCTGGGAGGCTCCTCTTGGAGAGCAAGATGCTGGTCAACAGCACT
GCTGTGTCATTGGCCAGTGTGGCCTACATCACTGTGGAGATTCTCATCGGGCTCTGCGCC
ATAGTGGGCAACGTGCTGGTCATCTGGGTGGTCAAGCTGAACCCCAGCCTGAAGACCACC
ACCTTCTATTTCATTGTCTCCCTTGCCCTGGCTGACATCGCTGTTGGGGTGCTGGTCATG
CCTTTGGCCATCGTCGTCAGCCTGGGTGTCACGATCCACTTTTATAGCTGCCTTCTCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCCTTCATGCCACACACATCCCCCCCCACCCCGACCCCGTTCTTTCCATCTTCTCGCC
GAGGGCTCCTGGCTCTGGGNTTCCTCTTGGCCCATCTCACTTCCTGAAAACAGCACTGTA
GAGCACTGCTTATCTCGATGGAGCTCGAGTAGCCCTCTGGAGGTGGGGGAACTGAGAGCC
GTGGCACTTTCACATTCGGCCCACACAGAACTGTCCTCCAGGCTTCTGGGAACTCGGGGA
CGTGTAGCCCATGTCGGGGCTGGAAGTGATGGCCCGGTGATGGGCTCTCTTTCAAGAGAG
GGGGTTCCACCAGCGCAGAGAAGGAATGGGCCAGTGGTGAGTTCTGGACTGCAGCTGCTG
CCCCTGGACTCTGGCAAGATGTCGGGCAAGAGCTAGGCTCCCTGGTCCACGCGGATCCTG
CGGGCACATCTGTCCCCTGGGAGGCTCCTCTTGGAGAGCAAGATGCTGGTCAACAGCACT
GCTGTGTCATTGGCCAGTGTGGCCTACATCACTGTGGAGATTCTCATCGGGCTCTGCGCC
ATAGTGGGCAACGTGCTGGTCATCTGGGTGGTCAAGCTGAACCCCAGCCTGAAGACCACC
ACCTTCTATTTCATTGTCTCCCTTGCCCTGGCTGACATCGCTGTTGGGGTGCTGGTCATG
CCTTTGGCCATCGTCGTCAGCCTGGGTGTCACGATCCACTTTTATAGCTGCCTTCTCATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3983358|gb|AAC83925.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3983358|gb|AAC83925.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               578-697, - strand, RNAz p=0.833865

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               578-697, - strand, RNAz p=0.833865

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               38-720, gnl|bosTau2|chr3 (27716168-27716851)
               

               
               38-720, gnl|Hg17|chr1 (111758482-111757761)
               

               
               38-720, gnl|Mm7|chr3 (105722642-105723348)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-720, gnl|bosTau2|chr3 (27716168-27716851)
               

               
               38-720, gnl|Hg17|chr1 (111758482-111757761)
               

               
               38-720, gnl|Mm7|chr3 (105722642-105723348)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	38-720, gnl\|bosTau2\|chr3 (27716168-27716851)
	38-720, gnl\|Hg17\|chr1 (111758482-111757761)
	38-720, gnl\|Mm7\|chr3 (105722642-105723348)