Non-Coding RNA Search

Ss1.1-Pig2-65I21.5

Sequence:


               
               TCTGTCTGCAGGACATCAAGAAACCGGACCAGGACAACTGGAAAAGTGGGCTGAATGCCA
TGGAGTGTGCTCTACTCTTGGAAAAGAATGTGAACCAGTCATTATTGGAATTGCACACTC
TGGCCTCAGACAAAGGTGATCCCCATTTGTGTGATTTTCTCGAAACCCACTACCTGAATG
AGCAGGTGAAGTCTATCAAAGAACTAGGTGACCACGTGCACAACTTGATTAAAATGGGGG
CCCCAGATTCTGGTCTAGCAGAGTACCTTTTTGACAAACATACCCTTGGAAATGAAAACA
ATCAGCACTAACCCACAGGCTGCCTTTTCCACCAGCCAGGGTGTGCCAGGACCCAGAGTC
ACTTGTTTTCACCTTTCTTTTTTTATACTCTTTTGTTAAAATGTCCCAATAAAGTGATTT
GTAGAGAAAATGTATTTAGCCTCATGTTAACAATAGCTTTTGCCCAGCATCAATGTAGTT
TTCCTAGCCCAGGATAAGGCGGTATAAAAAGGACTGCAAAAGAACTACTGAAATAGATGC
AAACTAAATGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTCTGCAGGACATCAAGAAACCGGACCAGGACAACTGGAAAAGTGGGCTGAATGCCA
TGGAGTGTGCTCTACTCTTGGAAAAGAATGTGAACCAGTCATTATTGGAATTGCACACTC
TGGCCTCAGACAAAGGTGATCCCCATTTGTGTGATTTTCTCGAAACCCACTACCTGAATG
AGCAGGTGAAGTCTATCAAAGAACTAGGTGACCACGTGCACAACTTGATTAAAATGGGGG
CCCCAGATTCTGGTCTAGCAGAGTACCTTTTTGACAAACATACCCTTGGAAATGAAAACA
ATCAGCACTAACCCACAGGCTGCCTTTTCCACCAGCCAGGGTGTGCCAGGACCCAGAGTC
ACTTGTTTTCACCTTTCTTTTTTTATACTCTTTTGTTAAAATGTCCCAATAAAGTGATTT
GTAGAGAAAATGTATTTAGCCTCATGTTAACAATAGCTTTTGCCCAGCATCAATGTAGTT
TTCCTAGCCCAGGATAAGGCGGTATAAAAAGGACTGCAAAAGAACTACTGAAATAGATGC
AAACTAAATGTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55589527|ref|XP_525088.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55589527|ref|XP_525088.1|

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-338, gnl|bosTau2|chr12 (48464467-48464795)
               

               
               1-338, gnl|canFam2|chr11 (42065999-42066698)
               

               
               1-338, gnl|dasNov1|scaffold_47393 (39904-40518)
               

               
               1-338, gnl|echTel1|scaffold_197242 (2413-3082)
               

               
               1-338, gnl|Hg17|chr13 (22168472-22168136)
               

               
               1-338, gnl|hg17|chr4 (123051116-123051714)
               

               
               1-338, gnl|loxAfr1|scaffold_923 (112079-111443)
               

               
               1-338, gnl|Mm7|chr19 (9664433-9665086)
               

               
               1-338, gnl|mm7|chrX (86131699-86131045)
               

               
               1-338, gnl|monDom2|scaffold_20 (964275-963592)
               

               
               1-338, gnl|oryCun1|scaffold_200015 (3143-3829)
               

               
               1-338, gnl|panTro1|chr3 (139885709-139886307)
               

               
               1-338, gnl|rheMac2|chr5 (114138278-114138883)
               

               
               1-338, gnl|rn3|chr1 (24188888-24189575)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-338, gnl|bosTau2|chr12 (48464467-48464795)
               

               
               1-338, gnl|canFam2|chr11 (42065999-42066698)
               

               
               1-338, gnl|dasNov1|scaffold_47393 (39904-40518)
               

               
               1-338, gnl|echTel1|scaffold_197242 (2413-3082)
               

               
               1-338, gnl|Hg17|chr13 (22168472-22168136)
               

               
               1-338, gnl|hg17|chr4 (123051116-123051714)
               

               
               1-338, gnl|loxAfr1|scaffold_923 (112079-111443)
               

               
               1-338, gnl|Mm7|chr19 (9664433-9665086)
               

               
               1-338, gnl|mm7|chrX (86131699-86131045)
               

               
               1-338, gnl|monDom2|scaffold_20 (964275-963592)
               

               
               1-338, gnl|oryCun1|scaffold_200015 (3143-3829)
               

               
               1-338, gnl|panTro1|chr3 (139885709-139886307)
               

               
               1-338, gnl|rheMac2|chr5 (114138278-114138883)
               

               
               1-338, gnl|rn3|chr1 (24188888-24189575)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cte (0.58548)
               

               
               tes (0.415628)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               tes (0.415628)

	1-338, gnl\|bosTau2\|chr12 (48464467-48464795)
	1-338, gnl\|canFam2\|chr11 (42065999-42066698)
	1-338, gnl\|dasNov1\|scaffold_47393 (39904-40518)
	1-338, gnl\|echTel1\|scaffold_197242 (2413-3082)
	1-338, gnl\|Hg17\|chr13 (22168472-22168136)
	1-338, gnl\|hg17\|chr4 (123051116-123051714)
	1-338, gnl\|loxAfr1\|scaffold_923 (112079-111443)
	1-338, gnl\|Mm7\|chr19 (9664433-9665086)
	1-338, gnl\|mm7\|chrX (86131699-86131045)
	1-338, gnl\|monDom2\|scaffold_20 (964275-963592)
	1-338, gnl\|oryCun1\|scaffold_200015 (3143-3829)
	1-338, gnl\|panTro1\|chr3 (139885709-139886307)
	1-338, gnl\|rheMac2\|chr5 (114138278-114138883)
	1-338, gnl\|rn3\|chr1 (24188888-24189575)