Non-Coding RNA Search

Ss1.1-Pig2-65N14.5

Sequence:


               
               CGTACATTATCAGTATGGGGACATGATCACCTACTCATGTTACAGTGGATACATGTTGGA
GGGCTCCCTAAGGAGTGTTTGCCTAGAGAATGGAACCTGGACATCACCTCCTGTCTGCAG
AGCTGTCTGTCGATTCCCGTGTCAGAATGGAGGTATCTGCCAACGCCCCAATGCTTGTTT
CTGTCCAGACGGCTGGATGGGGCGTCTCTGCGAAGAGCCCATCTGCATCCTTCCCTGTCT
GAACGGCGGTCGCTGTGTGGCCCCTTATCAGTGTGACTGCCCACTTGGCTGGACAGGGTC
CCGCTGTCATACAGCTGTTTGCCAGTCTCCCTGCTTAAATGGTGGAAAATGCGTAAGACC
AAACCGATGCCATTGTCTCTCAGCTTGGACAGGACATGACTGTTCCAGGAAAAGGAGGAC
TGGGTTTTAACCACTGCACAATCAACCAGCTCTTCTAAAAGCAGGCTCATCTCTTCCTGG
TAGTCCTGGACATGCTGGAACTTCTACAAAGACATTCCAACACGGTGCTGGGTCTTGTTT
TAATCAACTGGTTACTTTGTGGTCACCTTTTTATTTTGTGTTGTATTTTTTTCTTTCTTG
TGACATACTTTCTTACATGTTTCCATTTTTACACATGCCTGTATTTTCTATATAAAAATA
TATTAAATAGATGCTGCTCCACTCTCACAAAATGTACATACTCTGCTGTCTGTTGGGAAA
GTTCCTGGTACACATTTTTATTCAGTTACTCTCAGTGGTTTTTCAATTAAAATATATTTT
GCTACTAAATAATGTTTTGCTGGATAGTGCCATTTTGTGAGGTAGTCAGGGAATGATGAA
GAGGATTAATGATCTGTGCCACTAGCATATTTGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTACATTATCAGTATGGGGACATGATCACCTACTCATGTTACAGTGGATACATGTTGGA
GGGCTCCCTAAGGAGTGTTTGCCTAGAGAATGGAACCTGGACATCACCTCCTGTCTGCAG
AGCTGTCTGTCGATTCCCGTGTCAGAATGGAGGTATCTGCCAACGCCCCAATGCTTGTTT
CTGTCCAGACGGCTGGATGGGGCGTCTCTGCGAAGAGCCCATCTGCATCCTTCCCTGTCT
GAACGGCGGTCGCTGTGTGGCCCCTTATCAGTGTGACTGCCCACTTGGCTGGACAGGGTC
CCGCTGTCATACAGCTGTTTGCCAGTCTCCCTGCTTAAATGGTGGAAAATGCGTAAGACC
AAACCGATGCCATTGTCTCTCAGCTTGGACAGGACATGACTGTTCCAGGAAAAGGAGGAC
TGGGTTTTAACCACTGCACAATCAACCAGCTCTTCTAAAAGCAGGCTCATCTCTTCCTGG
TAGTCCTGGACATGCTGGAACTTCTACAAAGACATTCCAACACGGTGCTGGGTCTTGTTT
TAATCAACTGGTTACTTTGTGGTCACCTTTTTATTTTGTGTTGTATTTTTTTCTTTCTTG
TGACATACTTTCTTACATGTTTCCATTTTTACACATGCCTGTATTTTCTATATAAAAATA
TATTAAATAGATGCTGCTCCACTCTCACAAAATGTACATACTCTGCTGTCTGTTGGGAAA
GTTCCTGGTACACATTTTTATTCAGTTACTCTCAGTGGTTTTTCAATTAAAATATATTTT
GCTACTAAATAATGTTTTGCTGGATAGTGCCATTTTGTGAGGTAGTCAGGGAATGATGAA
GAGGATTAATGATCTGTGCCACTAGCATATTTGGGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               401-511, - strand, RNAz p=0.538769
               

               
               587-701, - strand, RNAz p=0.80453

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               401-511, - strand, RNAz p=0.538769
               

               
               587-701, - strand, RNAz p=0.80453

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               1-122, gnl|bosTau2|chr8 (53932753-53932874)
               

               
               1-122, gnl|canFam2|chr11 (68354169-68354260)
               

               
               1-122, gnl|danRer3|chr7 (11348521-11348612)
               

               
               1-122, gnl|echTel1|scaffold_287926 (107302-107393)
               

               
               1-122, gnl|galGal2|chrZ (32573412-32573499)
               

               
               1-122, gnl|hg17|chr9 (110221174-110221265)
               

               
               1-122, gnl|Hg17|chr9 (110221303-110221182)
               

               
               1-122, gnl|mm7|chr4 (58090491-58090582)
               

               
               1-122, gnl|Mm7|chr4 (58090620-58090499)
               

               
               1-122, gnl|monDom2|scaffold_17 (25664790-25664881)
               

               
               1-122, gnl|panTro1|chr11 (94747798-94747889)
               

               
               1-122, gnl|rheMac2|chr15 (25819901-25819810)
               

               
               1-122, gnl|rn3|chr5 (76033724-76033815)
               

               
               1-122, gnl|tetNig1|chrUn_random (21487638-21487550)
               

               
               1-122, gnl|xenTro1|scaffold_153 (2033983-2033896)
               


               
               401-870, gnl|bosTau2|chr8 (53946258-53946723)
               

               
               401-870, gnl|Hg17|chr9 (110208403-110207929)
               

               
               401-870, gnl|Mm7|chr4 (58084573-58084097)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-122, gnl|bosTau2|chr8 (53932753-53932874)
               

               
               1-122, gnl|canFam2|chr11 (68354169-68354260)
               

               
               1-122, gnl|danRer3|chr7 (11348521-11348612)
               

               
               1-122, gnl|echTel1|scaffold_287926 (107302-107393)
               

               
               1-122, gnl|galGal2|chrZ (32573412-32573499)
               

               
               1-122, gnl|hg17|chr9 (110221174-110221265)
               

               
               1-122, gnl|Hg17|chr9 (110221303-110221182)
               

               
               1-122, gnl|mm7|chr4 (58090491-58090582)
               

               
               1-122, gnl|Mm7|chr4 (58090620-58090499)
               

               
               1-122, gnl|monDom2|scaffold_17 (25664790-25664881)
               

               
               1-122, gnl|panTro1|chr11 (94747798-94747889)
               

               
               1-122, gnl|rheMac2|chr15 (25819901-25819810)
               

               
               1-122, gnl|rn3|chr5 (76033724-76033815)
               

               
               1-122, gnl|tetNig1|chrUn_random (21487638-21487550)
               

               
               1-122, gnl|xenTro1|scaffold_153 (2033983-2033896)
               


               
               401-870, gnl|bosTau2|chr8 (53946258-53946723)
               

               
               401-870, gnl|Hg17|chr9 (110208403-110207929)
               

               
               401-870, gnl|Mm7|chr4 (58084573-58084097)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cut (0.169924)
               

               
               csk (0.140746)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               csk (0.140746)

	401-511, - strand, RNAz p=0.538769
	587-701, - strand, RNAz p=0.80453

	1-122, gnl\|bosTau2\|chr8 (53932753-53932874)
	1-122, gnl\|canFam2\|chr11 (68354169-68354260)
	1-122, gnl\|danRer3\|chr7 (11348521-11348612)
	1-122, gnl\|echTel1\|scaffold_287926 (107302-107393)
	1-122, gnl\|galGal2\|chrZ (32573412-32573499)
	1-122, gnl\|hg17\|chr9 (110221174-110221265)
	1-122, gnl\|Hg17\|chr9 (110221303-110221182)
	1-122, gnl\|mm7\|chr4 (58090491-58090582)
	1-122, gnl\|Mm7\|chr4 (58090620-58090499)
	1-122, gnl\|monDom2\|scaffold_17 (25664790-25664881)
	1-122, gnl\|panTro1\|chr11 (94747798-94747889)
	1-122, gnl\|rheMac2\|chr15 (25819901-25819810)
	1-122, gnl\|rn3\|chr5 (76033724-76033815)
	1-122, gnl\|tetNig1\|chrUn_random (21487638-21487550)
	1-122, gnl\|xenTro1\|scaffold_153 (2033983-2033896)

	401-870, gnl\|bosTau2\|chr8 (53946258-53946723)
	401-870, gnl\|Hg17\|chr9 (110208403-110207929)
	401-870, gnl\|Mm7\|chr4 (58084573-58084097)