Non-Coding RNA Search

Ss1.1-Pig2-65P14.5

Sequence:


               
               TTGGTTCTGGGGAGGAAAGGGGGGAGCGGTGGCGCGGGGACTGGGGAGGGGCTAAGGAGG
GGGGGGTCACTTCGCCCCCTCACCCTCTCTCTCTCTCTGCCTTGTCCCGGCCCTGAGTGT
CGCCCCAGAAGGGCTTGAAGGAATGTAGTGGGTTAGGACACAACGGGGAGGGCGCAAACT
GGAGGAAGCGAGAGACGTCGCCAGGGACCCAGGGCCCTCTCCTTCTAGTTCCCCGAGCCC
GCCCGCCTCCACTGGCAACTCCCTGTAGAGCGCCCAATCTGCCCCGGCCAGTCTCCGGGC
TGGCAGTCTGGCCAGTACCCGGGGCGCTTGAGTGTCCTCTCCCCGGATCACTGCTTGGGC
CCCCACCTTGGGGAGGATGCGCCCGAGGTCTCGTCCCCGGGGCTCACTCTGAATCTGGCG
CCTGCTCTCTCAGGGGCACCCTCCCCAACCCGACGGTGGAGTTTTTGCCCCTCCTGAGAC
AGTGTGAGAGAAGGACAAACTTTTGAGTGGATAAAGATCAAGAAGAGCCCGTCCAGAGCA
GGCAGAGGCCCAGATTTCCTGAATCAAGGAATAGGAGGCCTTCTCCGGGACCCACACCTC
TTCTCTGGCCTCTCAAACTGGTGATGCTGTGAAGGTTTGGTGACATGGAGGAGGAGAAGG
GACAAGAGGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGTTCTGGGGAGGAAAGGGGGGAGCGGTGGCGCGGGGACTGGGGAGGGGCTAAGGAGG
GGGGGGTCACTTCGCCCCCTCACCCTCTCTCTCTCTCTGCCTTGTCCCGGCCCTGAGTGT
CGCCCCAGAAGGGCTTGAAGGAATGTAGTGGGTTAGGACACAACGGGGAGGGCGCAAACT
GGAGGAAGCGAGAGACGTCGCCAGGGACCCAGGGCCCTCTCCTTCTAGTTCCCCGAGCCC
GCCCGCCTCCACTGGCAACTCCCTGTAGAGCGCCCAATCTGCCCCGGCCAGTCTCCGGGC
TGGCAGTCTGGCCAGTACCCGGGGCGCTTGAGTGTCCTCTCCCCGGATCACTGCTTGGGC
CCCCACCTTGGGGAGGATGCGCCCGAGGTCTCGTCCCCGGGGCTCACTCTGAATCTGGCG
CCTGCTCTCTCAGGGGCACCCTCCCCAACCCGACGGTGGAGTTTTTGCCCCTCCTGAGAC
AGTGTGAGAGAAGGACAAACTTTTGAGTGGATAAAGATCAAGAAGAGCCCGTCCAGAGCA
GGCAGAGGCCCAGATTTCCTGAATCAAGGAATAGGAGGCCTTCTCCGGGACCCACACCTC
TTCTCTGGCCTCTCAAACTGGTGATGCTGTGAAGGTTTGGTGACATGGAGGAGGAGAAGG
GACAAGAGGGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               546-669, + strand, RNAz p=0.890503

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               546-669, + strand, RNAz p=0.890503

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               10-542, gnl|bosTau2|chr5 (16661772-16661245)
               

               
               10-542, gnl|Hg17|chr12 (52806136-52806664)
               


               
               546-669, gnl|bosTau2|chr5 (16656212-16656089)
               

               
               546-669, gnl|Mm7|chr15 (103093549-103093671)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-542, gnl|bosTau2|chr5 (16661772-16661245)
               

               
               10-542, gnl|Hg17|chr12 (52806136-52806664)
               


               
               546-669, gnl|bosTau2|chr5 (16656212-16656089)
               

               
               546-669, gnl|Mm7|chr15 (103093549-103093671)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	10-542, gnl\|bosTau2\|chr5 (16661772-16661245)
	10-542, gnl\|Hg17\|chr12 (52806136-52806664)

	546-669, gnl\|bosTau2\|chr5 (16656212-16656089)
	546-669, gnl\|Mm7\|chr15 (103093549-103093671)