Non-Coding RNA Search

Ss1.1-Pig2-66A04.5

Sequence:


               
               CTAGGCTTTGTGGGGAGCGCACCCCAGAAGGGGGTGCTGAAGGAGTGGACGCTGATGCTG
CACGGCACGCAGAGCGCCCCTTACATCGACCAGGTGGTGAGGGATTACCAGTCCAAGCTG
GCCATGTCCAAGAAGGAGGAGCTGGAGGAAGAGCTGGACGAAGCAGTGGAGAGAAGCCTG
AAGAGCATCCTGGGCAAGCACTAGCGCCACCTTCCGGCCGCCGCCGCCGCCCTGCCCGAC
TCTGCCTCTGTCCTCGCTCCACATCCCACCCATCGCCTCGCAATCACTGTCCCCCGACCC
ACGATTCCTGATCCGCCGCTTCGCTCACTGTCGGTGATTATTTTCATTACCATGAAAGCA
AGCTTTTTTATTCTGTGCCCCAAATACAGTGTTCCCACCCACACCTCTGTCCCATGTGTG
ACTCCAAGTTCTTTATTTCTGTCATTCAGGTAGGGGATTTCCTGCCAACCAACCTGGGAC
AGCTTACCCCTCAACTTCTTTCCTAGAAGAGAGGAGGAGAGAATGCCTTTTAAAAGCCAC
ACACGGTGACTCCAAGGACCGTTTATTCATGGTCTCAACTGAGGACCTGTGATCTAAAAG
CATAATCTAAGATTATGTCTGAGGGTGACCTCCAAGCCTCTTAAACCACAGATGCTGTAA
ATCCTTTGGGGAAAGATGTTTTGATTTAACGAGATTTTTTTCAGGGACGTAGTTGAAGGT
GGCGTGAATTGAAAGATGCCATGCATGAGAGCTGTAATTACCAGGCGGGGTGGAGAGAGT
CCAGAAGCATGAGCCTTGGACATCTTAATGCCAACATCAAGGTCATAGCTCATCCCACTC
AGCCAGTGGGATAGATATAAGATCTAAGGAGCCTGGATGTTTGTTCACCAGCTGCTACTC
TGAGTGATGGCAAAACCTGCTAGAGATGCCCAAACTATTCTCAATGTGTTTTGTGTTGAC
CCCCAGCCCTAGTTTCCCAGGGTCCCTGCCATAGCAATCCCAAAGCAAAAAGGCAAGGCA
GGACAGGCAACAAGGCTGGGGAAGAGTAGGTTAGCAATTTTTAACTGAGAAATGTTCCTC
TTCCTGGGTCACTCTGGGGCTTCTTAATCTGATGGACATGAGAATCGAGGGAAGTGTCTG
CAGCAGCTTCCACATGTCTGCTTGGGCTTTTTTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAGGCTTTGTGGGGAGCGCACCCCAGAAGGGGGTGCTGAAGGAGTGGACGCTGATGCTG
CACGGCACGCAGAGCGCCCCTTACATCGACCAGGTGGTGAGGGATTACCAGTCCAAGCTG
GCCATGTCCAAGAAGGAGGAGCTGGAGGAAGAGCTGGACGAAGCAGTGGAGAGAAGCCTG
AAGAGCATCCTGGGCAAGCACTAGCGCCACCTTCCGGCCGCCGCCGCCGCCCTGCCCGAC
TCTGCCTCTGTCCTCGCTCCACATCCCACCCATCGCCTCGCAATCACTGTCCCCCGACCC
ACGATTCCTGATCCGCCGCTTCGCTCACTGTCGGTGATTATTTTCATTACCATGAAAGCA
AGCTTTTTTATTCTGTGCCCCAAATACAGTGTTCCCACCCACACCTCTGTCCCATGTGTG
ACTCCAAGTTCTTTATTTCTGTCATTCAGGTAGGGGATTTCCTGCCAACCAACCTGGGAC
AGCTTACCCCTCAACTTCTTTCCTAGAAGAGAGGAGGAGAGAATGCCTTTTAAAAGCCAC
ACACGGTGACTCCAAGGACCGTTTATTCATGGTCTCAACTGAGGACCTGTGATCTAAAAG
CATAATCTAAGATTATGTCTGAGGGTGACCTCCAAGCCTCTTAAACCACAGATGCTGTAA
ATCCTTTGGGGAAAGATGTTTTGATTTAACGAGATTTTTTTCAGGGACGTAGTTGAAGGT
GGCGTGAATTGAAAGATGCCATGCATGAGAGCTGTAATTACCAGGCGGGGTGGAGAGAGT
CCAGAAGCATGAGCCTTGGACATCTTAATGCCAACATCAAGGTCATAGCTCATCCCACTC
AGCCAGTGGGATAGATATAAGATCTAAGGAGCCTGGATGTTTGTTCACCAGCTGCTACTC
TGAGTGATGGCAAAACCTGCTAGAGATGCCCAAACTATTCTCAATGTGTTTTGTGTTGAC
CCCCAGCCCTAGTTTCCCAGGGTCCCTGCCATAGCAATCCCAAAGCAAAAAGGCAAGGCA
GGACAGGCAACAAGGCTGGGGAAGAGTAGGTTAGCAATTTTTAACTGAGAAATGTTCCTC
TTCCTGGGTCACTCTGGGGCTTCTTAATCTGATGGACATGAGAATCGAGGGAAGTGTCTG
CAGCAGCTTCCACATGTCTGCTTGGGCTTTTTTTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               867-986, - strand, RNAz p=0.819584

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               867-986, - strand, RNAz p=0.819584

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1154, gnl|bosTau2|chr13 (23893009-23894116)
               

               
               1-1154, gnl|Hg17|chr20 (17410512-17411699)
               

               
               1-1154, gnl|Mm7|chr2 (143554465-143555566)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1154, gnl|bosTau2|chr13 (23893009-23894116)
               

               
               1-1154, gnl|Hg17|chr20 (17410512-17411699)
               

               
               1-1154, gnl|Mm7|chr2 (143554465-143555566)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-1154, gnl\|bosTau2\|chr13 (23893009-23894116)
	1-1154, gnl\|Hg17\|chr20 (17410512-17411699)
	1-1154, gnl\|Mm7\|chr2 (143554465-143555566)