Non-Coding RNA Search

Ss1.1-Pig2-66B13.5

Sequence:


               
               GTTCAGTTCACTCGTGGTGTGGACTTCAATTGGCAAGCCCAGGCCCTGCTGGCCCTACAA
GAGGCGGCAGAAGCGTTTCTCGTTCATCTCTTTGAGGACGCCTACCTCCTCTCCCTGCAC
GCCGGCCGCGTGACTCTCTTCCCCAAGGACATCCAGCTGGCCAGGAGGATCCGGGGCATT
CAGGAAGGGCTCGGCTGAGCTCCCGCCGCCGGTGTCGCTGGAAGCCTCCCCTGCCCCCCC
AGAGAATGAGTGCACTTGGGGGAAAACCACCCAGCCTCCCATCACCTCTGAAGGAATTTG
CCTTCTCCATCCTTGGTCCTTTGCTGCCCCGCCTGCCCTTTGTTCTCTGGAAAAGATCCG
ACTAAGTTTTAACTTGAGTGCCTGGGATTCTTTTGAACAATGTTCTCCTTGACTTTATGA
CCAGACAACGTGCATCTCTGCCAGAGGAGTCCTCTCCACTTCACAAAGACCAGATGACCT
CATTTGGATTAAAAGAAAGTTGTTTTTTTTTAATGCCTTGTTAATAAATGTGATTCCTGA
ATTTCAGAGATGATACCCAGGACTCTGCCCGTTGCAGGACCAGATCCGCGGAGGACGTGT
GAGGTGCCGTCTGGACTTGCCGTCCCAGAGCTGTGTGCACGCATTGCTTTTGTAATTCGT
TTTTTTTAAGGTGGAGAAGACCGTATGGCTTTCCTCTGTAACCGAGGTGATGTATGAGAG
AATCAACACATTCCACAAGCCCTGAGAAAAATTTTTCAGATGAAGAGACTCCAAGGTTGA
TGTCACTTTGAAAATTATTCATGTGACTGTTGGATGCTTTTGAAGACATCAGGTGTTCTA
GGTTATGGGAGAAAAGAATATTTATTGATTATTTTAGATCTTTCTGTACCATGTAATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCAGTTCACTCGTGGTGTGGACTTCAATTGGCAAGCCCAGGCCCTGCTGGCCCTACAA
GAGGCGGCAGAAGCGTTTCTCGTTCATCTCTTTGAGGACGCCTACCTCCTCTCCCTGCAC
GCCGGCCGCGTGACTCTCTTCCCCAAGGACATCCAGCTGGCCAGGAGGATCCGGGGCATT
CAGGAAGGGCTCGGCTGAGCTCCCGCCGCCGGTGTCGCTGGAAGCCTCCCCTGCCCCCCC
AGAGAATGAGTGCACTTGGGGGAAAACCACCCAGCCTCCCATCACCTCTGAAGGAATTTG
CCTTCTCCATCCTTGGTCCTTTGCTGCCCCGCCTGCCCTTTGTTCTCTGGAAAAGATCCG
ACTAAGTTTTAACTTGAGTGCCTGGGATTCTTTTGAACAATGTTCTCCTTGACTTTATGA
CCAGACAACGTGCATCTCTGCCAGAGGAGTCCTCTCCACTTCACAAAGACCAGATGACCT
CATTTGGATTAAAAGAAAGTTGTTTTTTTTTAATGCCTTGTTAATAAATGTGATTCCTGA
ATTTCAGAGATGATACCCAGGACTCTGCCCGTTGCAGGACCAGATCCGCGGAGGACGTGT
GAGGTGCCGTCTGGACTTGCCGTCCCAGAGCTGTGTGCACGCATTGCTTTTGTAATTCGT
TTTTTTTAAGGTGGAGAAGACCGTATGGCTTTCCTCTGTAACCGAGGTGATGTATGAGAG
AATCAACACATTCCACAAGCCCTGAGAAAAATTTTTCAGATGAAGAGACTCCAAGGTTGA
TGTCACTTTGAAAATTATTCATGTGACTGTTGGATGCTTTTGAAGACATCAGGTGTTCTA
GGTTATGGGAGAAAAGAATATTTATTGATTATTTTAGATCTTTCTGTACCATGTAATTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|602416|gb|AAA57417.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|602416|gb|AAA57417.1|

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               62-391, gnl|bosTau2|chr11 (55212396-55212743)
               

               
               62-391, gnl|Hg17|chr2 (26927662-26927982)
               


               
               473-670, gnl|bosTau2|chr11 (55213304-55213500)
               

               
               473-670, gnl|Hg17|chr2 (26928257-26928450)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               62-391, gnl|bosTau2|chr11 (55212396-55212743)
               

               
               62-391, gnl|Hg17|chr2 (26927662-26927982)
               


               
               473-670, gnl|bosTau2|chr11 (55213304-55213500)
               

               
               473-670, gnl|Hg17|chr2 (26928257-26928450)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               spl (0.286369)
               

               
               ill (0.175593)
               

               
               ova (0.129132)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               ill (0.175593)
               

               
               ova (0.129132)

	62-391, gnl\|bosTau2\|chr11 (55212396-55212743)
	62-391, gnl\|Hg17\|chr2 (26927662-26927982)

	473-670, gnl\|bosTau2\|chr11 (55213304-55213500)
	473-670, gnl\|Hg17\|chr2 (26928257-26928450)