Non-Coding RNA Search

Ss1.1-Pig2-66B19.5

Sequence:


               
               CTCAGGACCCAGTGAATTTAAGAGGGTTTTTTTTTTTTTTTTCCTTCCTCTCTCCTCTAA
GAGAAAAGATGTCCTACAGGAGTGAATAGCTCCTTGGGGGGGTTGAACTGGCCAGAATTT
GAAGGAGGAACAAATTGAGTGTCTTCTACTTCACTTCCACATGTCCCTCCTGTATGAAAT
TCTGTCCCAACCTTCATTTTAAAATGTATTCGTAGAATATGTTATACCTTTCTTTCTCTG
GGCTCCTAACTTAGCCTTCAACCTAGAATGGGAACAGTCCTCTGTCTGTCTTACAAGACC
ATAAGCTCCTGGAGGACAAAGCTGGAGGATTAATCTCTGCTGCTCCGTGAGGTACAGTGA
CTTAAAATGAGAGCATCTTTAAATGATGACTCATTCAAATGAATAAAACAGTGTGTTTTT
GTTTTCAGATCAGACTTCATTCCGTAAATTTTAGGCACTATGAGATTTCGTAGTGGAGAG
GATAGTTGGAAAATTTTGAGGGGTGGGCACAAGGGGGAGGAAGTCGCTGCTTATTTTGAA
GTACTTCCATCCCTGCTCTGGGCAGTGAGCTGTTTCTTTCCGACTGCCCAGCATGTTCCG
GGCACTTTGTGTCTCTGCACAAGAATCACACGTGCCAAGTTTCATTTCTTTTCACAAACC
TTTGTTCTCGGTTTGTCATCACCCATGCCACAAATCTAAGTCGTCCGAGTCATCTGCTTC
CCGATTTCTTACTCCCCACCTCAGTCTGCAGCTAAGTCCTGTCAGTTCTACCTCAGCAGC
CCTTCACATCTCTTCTCCTCCACTAGATAATCTCACGAGCCTCTCAGCTTCCTTCACCTC
TTCTTACCACAGCCTGCTGTCTACATGATACAGGTTCATCCTGCTGAAACCTAGCTCTGA
CCATGTATCTCATGTGTGTGTTCTGTCTCCACTGCTAGACTGTAAGCTCCTTATGGGCAG
GATCTGTGTGTGAGTCATCTTTGTATCTCCCATAGCCGCTATCAATAAATATATCTTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAGGACCCAGTGAATTTAAGAGGGTTTTTTTTTTTTTTTTCCTTCCTCTCTCCTCTAA
GAGAAAAGATGTCCTACAGGAGTGAATAGCTCCTTGGGGGGGTTGAACTGGCCAGAATTT
GAAGGAGGAACAAATTGAGTGTCTTCTACTTCACTTCCACATGTCCCTCCTGTATGAAAT
TCTGTCCCAACCTTCATTTTAAAATGTATTCGTAGAATATGTTATACCTTTCTTTCTCTG
GGCTCCTAACTTAGCCTTCAACCTAGAATGGGAACAGTCCTCTGTCTGTCTTACAAGACC
ATAAGCTCCTGGAGGACAAAGCTGGAGGATTAATCTCTGCTGCTCCGTGAGGTACAGTGA
CTTAAAATGAGAGCATCTTTAAATGATGACTCATTCAAATGAATAAAACAGTGTGTTTTT
GTTTTCAGATCAGACTTCATTCCGTAAATTTTAGGCACTATGAGATTTCGTAGTGGAGAG
GATAGTTGGAAAATTTTGAGGGGTGGGCACAAGGGGGAGGAAGTCGCTGCTTATTTTGAA
GTACTTCCATCCCTGCTCTGGGCAGTGAGCTGTTTCTTTCCGACTGCCCAGCATGTTCCG
GGCACTTTGTGTCTCTGCACAAGAATCACACGTGCCAAGTTTCATTTCTTTTCACAAACC
TTTGTTCTCGGTTTGTCATCACCCATGCCACAAATCTAAGTCGTCCGAGTCATCTGCTTC
CCGATTTCTTACTCCCCACCTCAGTCTGCAGCTAAGTCCTGTCAGTTCTACCTCAGCAGC
CCTTCACATCTCTTCTCCTCCACTAGATAATCTCACGAGCCTCTCAGCTTCCTTCACCTC
TTCTTACCACAGCCTGCTGTCTACATGATACAGGTTCATCCTGCTGAAACCTAGCTCTGA
CCATGTATCTCATGTGTGTGTTCTGTCTCCACTGCTAGACTGTAAGCTCCTTATGGGCAG
GATCTGTGTGTGAGTCATCTTTGTATCTCCCATAGCCGCTATCAATAAATATATCTTGAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               506-621, + strand, RNAz p=0.913513
               

               
               514-650, - strand, RNAz p=0.954909

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               506-621, + strand, RNAz p=0.913513
               

               
               514-650, - strand, RNAz p=0.954909

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               66-276, gnl|bosTau2|chr7 (43604893-43605105)
               

               
               66-276, gnl|Hg17|chr5 (151170139-151170361)
               


               
               428-1020, gnl|bosTau2|chr7 (43605251-43605851)
               

               
               428-1020, gnl|canFam2|chr4 (60745826-60745186)
               

               
               428-1020, gnl|dasNov1|scaffold_31596 (47260-46588)
               

               
               428-1020, gnl|echTel1|scaffold_319513 (50213-50855)
               

               
               428-1020, gnl|hg17|chr5 (151170263-151170908)
               

               
               428-1020, gnl|Hg17|chr5 (151170517-151171102)
               

               
               428-1020, gnl|loxAfr1|scaffold_21114 (55964-55315)
               

               
               428-1020, gnl|mm7|chr11 (55460959-55461416)
               

               
               428-1020, gnl|oryCun1|scaffold_191969 (141726-141082)
               

               
               428-1020, gnl|panTro1|chr4 (158118429-158119077)
               

               
               428-1020, gnl|rheMac2|chr6 (148254255-148254887)
               

               
               428-1020, gnl|rn3|chr10 (40926722-40927160)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-276, gnl|bosTau2|chr7 (43604893-43605105)
               

               
               66-276, gnl|Hg17|chr5 (151170139-151170361)
               


               
               428-1020, gnl|bosTau2|chr7 (43605251-43605851)
               

               
               428-1020, gnl|canFam2|chr4 (60745826-60745186)
               

               
               428-1020, gnl|dasNov1|scaffold_31596 (47260-46588)
               

               
               428-1020, gnl|echTel1|scaffold_319513 (50213-50855)
               

               
               428-1020, gnl|hg17|chr5 (151170263-151170908)
               

               
               428-1020, gnl|Hg17|chr5 (151170517-151171102)
               

               
               428-1020, gnl|loxAfr1|scaffold_21114 (55964-55315)
               

               
               428-1020, gnl|mm7|chr11 (55460959-55461416)
               

               
               428-1020, gnl|oryCun1|scaffold_191969 (141726-141082)
               

               
               428-1020, gnl|panTro1|chr4 (158118429-158119077)
               

               
               428-1020, gnl|rheMac2|chr6 (148254255-148254887)
               

               
               428-1020, gnl|rn3|chr10 (40926722-40927160)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               tbr (0.154178)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	506-621, + strand, RNAz p=0.913513
	514-650, - strand, RNAz p=0.954909

	66-276, gnl\|bosTau2\|chr7 (43604893-43605105)
	66-276, gnl\|Hg17\|chr5 (151170139-151170361)

	428-1020, gnl\|bosTau2\|chr7 (43605251-43605851)
	428-1020, gnl\|canFam2\|chr4 (60745826-60745186)
	428-1020, gnl\|dasNov1\|scaffold_31596 (47260-46588)
	428-1020, gnl\|echTel1\|scaffold_319513 (50213-50855)
	428-1020, gnl\|hg17\|chr5 (151170263-151170908)
	428-1020, gnl\|Hg17\|chr5 (151170517-151171102)
	428-1020, gnl\|loxAfr1\|scaffold_21114 (55964-55315)
	428-1020, gnl\|mm7\|chr11 (55460959-55461416)
	428-1020, gnl\|oryCun1\|scaffold_191969 (141726-141082)
	428-1020, gnl\|panTro1\|chr4 (158118429-158119077)
	428-1020, gnl\|rheMac2\|chr6 (148254255-148254887)
	428-1020, gnl\|rn3\|chr10 (40926722-40927160)