Non-Coding RNA Search

Ss1.1-Pig2-66B24.5

Sequence:


               
               GCAGTGATAGCACAGCCTCCGCAGCCAACACAACCTCCACAGCAGCCGAATGTCTCCTCA
GCATAAAGCTTTCTTGCCTCATTAAGGAAAAAACTGAAAGCAATCTATCCTTGTGTGCCA
CTGGTGTTCTTTCCACTTTATACGAAAGCAAGTAGCCATGCTTCGGTTGTGTGTTTGGCC
TTTTCAGTATTAGACAATCATTCTGCAAGAGCTTTTCCTCTCTTTGAGATGTCATGCAGT
GCTGTTGATGTCCGGTTTATGTCATCAGTACACAAGGAGAATAATAGATGGGAGTGTATT
AGAGCAAAAGCAAAGTTTGCATTTTACCTGGTGGGCATGACTGGGGTCTTCTAAGAGCTT
TGGTGGCTCTCTCATGTTTCCTATTACCCATGGATTTACCCTGAGCCTTCCTATCACTTT
ATAAATAACAGTTCATCTAAAGAGCCACTTTTCTTTCAATATCAGTAACATTTGCCTACG
TAAGTTTTCATTTATTTGTGTTTTATTTATTACAGGGCTGCTATTTTCATAATGTACATG
AACAATGTCACAGAACTTTTTTAATTTTTTTGAATAATTATAAGTATCAGTAAAGGAATT
GAAAGACAGGATTGCATTTAACAGATAAAACGTTTAGGCAATAATTGAACAAAAGAATCC
TGGCATATTTCTAACACTAATGGCAATTTACTTTTGGTATTTATTTTCAGTAGTAAAGAC
CCAGCTTGAATGTAAATTTTGTATAGTGTAAGTATGAAGAACATAGTGCAACTGTACAGG
TAGTCACCAGTTATTGTGATATAATAAATAATTGGACTATTTTGATGAAGAAAACTTTGT
TCATTTGTTTCTACTTTCTAATAGAGAAATTGCCACGATTCCTCTGCTTTTTGACATTTC
GTATGACTTTTTTTCGGGTGGGAATAAAAAGCTGTGAAATTGTTCAACCTACTTTGTAAC
CAAAGAAGCAAAGCTGTGTAATGGAGTTTTTTGTTGTTGTTGTTGTTGGTTTTTTTTTTT
ATAATGCACATTCTTTATGTATTTTTATTTAGTGTTTTCTCGGTCACAATTTTCTTTGCT
GTCTAGCATGATCTGCATGACCTATAATCTTTGAACCACTTTCGTACCTCATGTTTTTAT
CCAGCACTCTTATTGTAATATGTACTAGTCTGTGAACAATGTCAAATGAAAAAGAACGAA
CAGGTAGTATGGTGGAGCTGAGCTAGTGTACTATACACTAGTTGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGTGATAGCACAGCCTCCGCAGCCAACACAACCTCCACAGCAGCCGAATGTCTCCTCA
GCATAAAGCTTTCTTGCCTCATTAAGGAAAAAACTGAAAGCAATCTATCCTTGTGTGCCA
CTGGTGTTCTTTCCACTTTATACGAAAGCAAGTAGCCATGCTTCGGTTGTGTGTTTGGCC
TTTTCAGTATTAGACAATCATTCTGCAAGAGCTTTTCCTCTCTTTGAGATGTCATGCAGT
GCTGTTGATGTCCGGTTTATGTCATCAGTACACAAGGAGAATAATAGATGGGAGTGTATT
AGAGCAAAAGCAAAGTTTGCATTTTACCTGGTGGGCATGACTGGGGTCTTCTAAGAGCTT
TGGTGGCTCTCTCATGTTTCCTATTACCCATGGATTTACCCTGAGCCTTCCTATCACTTT
ATAAATAACAGTTCATCTAAAGAGCCACTTTTCTTTCAATATCAGTAACATTTGCCTACG
TAAGTTTTCATTTATTTGTGTTTTATTTATTACAGGGCTGCTATTTTCATAATGTACATG
AACAATGTCACAGAACTTTTTTAATTTTTTTGAATAATTATAAGTATCAGTAAAGGAATT
GAAAGACAGGATTGCATTTAACAGATAAAACGTTTAGGCAATAATTGAACAAAAGAATCC
TGGCATATTTCTAACACTAATGGCAATTTACTTTTGGTATTTATTTTCAGTAGTAAAGAC
CCAGCTTGAATGTAAATTTTGTATAGTGTAAGTATGAAGAACATAGTGCAACTGTACAGG
TAGTCACCAGTTATTGTGATATAATAAATAATTGGACTATTTTGATGAAGAAAACTTTGT
TCATTTGTTTCTACTTTCTAATAGAGAAATTGCCACGATTCCTCTGCTTTTTGACATTTC
GTATGACTTTTTTTCGGGTGGGAATAAAAAGCTGTGAAATTGTTCAACCTACTTTGTAAC
CAAAGAAGCAAAGCTGTGTAATGGAGTTTTTTGTTGTTGTTGTTGTTGGTTTTTTTTTTT
ATAATGCACATTCTTTATGTATTTTTATTTAGTGTTTTCTCGGTCACAATTTTCTTTGCT
GTCTAGCATGATCTGCATGACCTATAATCTTTGAACCACTTTCGTACCTCATGTTTTTAT
CCAGCACTCTTATTGTAATATGTACTAGTCTGTGAACAATGTCAAATGAAAAAGAACGAA
CAGGTAGTATGGTGGAGCTGAGCTAGTGTACTATACACTAGTTGTAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               353-472, - strand, RNAz p=0.9953
               

               
               711-828, - strand, RNAz p=0.727117
               

               
               909-1165, + strand, RNAz p=0.948475

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               353-472, - strand, RNAz p=0.9953
               

               
               711-828, - strand, RNAz p=0.727117
               

               
               909-1165, + strand, RNAz p=0.948475

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               673-766, + strand, RNAmicro p=0.938229

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               673-766, + strand, RNAmicro p=0.938229

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014779, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014779, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1248, gnl|bosTau2|chr1 (75066113-75067344)
               

               
               1-1248, gnl|Hg17|chr3 (151659056-151660319)
               

               
               1-1248, gnl|Mm7|chr3 (58588975-58590206)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1248, gnl|bosTau2|chr1 (75066113-75067344)
               

               
               1-1248, gnl|Hg17|chr3 (151659056-151660319)
               

               
               1-1248, gnl|Mm7|chr3 (58588975-58590206)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ski (0.29347)
               

               
               mgp (0.230681)
               

               
               ton (0.1755)
               

               
               pty (0.142714)
               

               
               eep (0.122564)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.29347)
               

               
               mgp (0.230681)
               

               
               ton (0.1755)
               

               
               pty (0.142714)
               

               
               eep (0.122564)

	353-472, - strand, RNAz p=0.9953
	711-828, - strand, RNAz p=0.727117
	909-1165, + strand, RNAz p=0.948475

	1-1248, gnl\|bosTau2\|chr1 (75066113-75067344)
	1-1248, gnl\|Hg17\|chr3 (151659056-151660319)
	1-1248, gnl\|Mm7\|chr3 (58588975-58590206)

	ski (0.29347)
	mgp (0.230681)
	ton (0.1755)
	pty (0.142714)
	eep (0.122564)