Ss1.1-Pig2-66F16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACACTGTGTTTTGTTTTGCCTTACTCGAGAGAGAGAATGGCAGTTGGAGTGCTCTTAAA AGTAGCCTGGCTGTCGAGCAGAAGGCACTTTTCTTTTCCTCAAGGAATAAACCAAAATAT GATTTGGGGAGATGGGGAGAAGAGTAAAGAGCAAAGTCAGGACTTGGCAGAAGCAGCCAT GGGAAATCAGGGGCTAACTTTGGTATTTACTCTGGTGCCCAACCAAGAACCCAGGTGGAA AGGGCTCTGGTGGCAGCTTTAGAGGCTTGTCCAGCGGGATCAGCTTTGATTTTCACTGAC CAGCTGGGGGTGTATACTCAGCACAGGGTGCATTCTGGCTGTTGACCAGATTGCCACCAA GTCGCCAATGCCACTGATGAGCTGCCCATACTGGGAAGCAGTGTCACAAATGCTCCGACA CCACCTGCTTTGGGGACTGTCTTTGGTCCCCTCACTTGTGGCTAGAGGCAGTCAAAAGAC AAGAGCAGCTGGAGAGAGAGAATTAATGTCCCCTCCCTGTCATCTTTCCAGTGGCGAGAA TGTGGGAGTTGGTACAAGGAGCAGACGGGGAGGTAAGGGAGCCAGAACATTTGTAAAGAA GAACGACCTGTCCCTCAGCACCACCACCTTCCCCCCCGCCCCCAAGCTGGTGCAGAGCCT CCCCTGGGTAATCCACACCTGGACCCTGTTTACATCCTGTGCCATAAGCACAGCCAAGCC CAGGCCAAACTCTTGCTGGCCTTGGAGTTCCAACAGGCTGGCTCAGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACACTGTGTTTTGTTTTGCCTTACTCGAGAGAGAGAATGGCAGTTGGAGTGCTCTTAAA AGTAGCCTGGCTGTCGAGCAGAAGGCACTTTTCTTTTCCTCAAGGAATAAACCAAAATAT GATTTGGGGAGATGGGGAGAAGAGTAAAGAGCAAAGTCAGGACTTGGCAGAAGCAGCCAT GGGAAATCAGGGGCTAACTTTGGTATTTACTCTGGTGCCCAACCAAGAACCCAGGTGGAA AGGGCTCTGGTGGCAGCTTTAGAGGCTTGTCCAGCGGGATCAGCTTTGATTTTCACTGAC CAGCTGGGGGTGTATACTCAGCACAGGGTGCATTCTGGCTGTTGACCAGATTGCCACCAA GTCGCCAATGCCACTGATGAGCTGCCCATACTGGGAAGCAGTGTCACAAATGCTCCGACA CCACCTGCTTTGGGGACTGTCTTTGGTCCCCTCACTTGTGGCTAGAGGCAGTCAAAAGAC AAGAGCAGCTGGAGAGAGAGAATTAATGTCCCCTCCCTGTCATCTTTCCAGTGGCGAGAA TGTGGGAGTTGGTACAAGGAGCAGACGGGGAGGTAAGGGAGCCAGAACATTTGTAAAGAA GAACGACCTGTCCCTCAGCACCACCACCTTCCCCCCCGCCCCCAAGCTGGTGCAGAGCCT CCCCTGGGTAATCCACACCTGGACCCTGTTTACATCCTGTGCCATAAGCACAGCCAAGCC CAGGCCAAACTCTTGCTGGCCTTGGAGTTCCAACAGGCTGGCTCAGCT |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 135-243, - strand, RNAz p=0.912016 | |
| 407-497, - strand, RNAz p=0.980205 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 135-243, - strand, RNAz p=0.912016 | |
| 407-497, - strand, RNAz p=0.980205 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 33-243, gnl|bosTau2|chr7 (47982443-47982226) | |
| 33-243, gnl|canFam2|chr4 (55939601-55938697) | |
| 33-243, gnl|dasNov1|scaffold_35334 (3470-2593) | |
| 33-243, gnl|echTel1|scaffold_276363 (48049-47177) | |
| 33-243, gnl|hg17|chr5 (156832694-156833615) | |
| 33-243, gnl|Hg17|chr5 (156833385-156833609) | |
| 33-243, gnl|loxAfr1|scaffold_3179 (3900-4824) | |
| 33-243, gnl|mm7|chr11 (46106752-46105932) | |
| 33-243, gnl|Mm7|chr11 (46106128-46105947) | |
| 33-243, gnl|monDom2|scaffold_6 (47955514-47954485) | |
| 33-243, gnl|oryCun1|scaffold_195898 (29581-30485) | |
| 33-243, gnl|panTro1|chr4 (163964226-163965147) | |
| 33-243, gnl|rheMac2|chr6 (153843677-153844589) | |
| 33-243, gnl|rn3|chr10 (31286450-31285626) | |
| 255-629, gnl|bosTau2|chr7 (47982023-47981640) | |
| 255-629, gnl|canFam2|chr4 (55938696-55938328) | |
| 255-629, gnl|dasNov1|scaffold_35334 (2591-2206) | |
| 255-629, gnl|echTel1|scaffold_276363 (47176-46747) | |
| 255-629, gnl|hg17|chr5 (156833616-156834006) | |
| 255-629, gnl|Hg17|chr5 (156833640-156834014) | |
| 255-629, gnl|loxAfr1|scaffold_3179 (4825-5215) | |
| 255-629, gnl|mm7|chr11 (46105931-46105532) | |
| 255-629, gnl|Mm7|chr11 (46105909-46105527) | |
| 255-629, gnl|monDom2|scaffold_6 (47954484-47953961) | |
| 255-629, gnl|oryCun1|scaffold_195898 (30486-30879) | |
| 255-629, gnl|panTro1|chr4 (163965148-163965538) | |
| 255-629, gnl|rheMac2|chr6 (153844590-153844991) | |
| 255-629, gnl|rn3|chr10 (31285625-31285260) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 33-243, gnl|bosTau2|chr7 (47982443-47982226) | |
| 33-243, gnl|canFam2|chr4 (55939601-55938697) | |
| 33-243, gnl|dasNov1|scaffold_35334 (3470-2593) | |
| 33-243, gnl|echTel1|scaffold_276363 (48049-47177) | |
| 33-243, gnl|hg17|chr5 (156832694-156833615) | |
| 33-243, gnl|Hg17|chr5 (156833385-156833609) | |
| 33-243, gnl|loxAfr1|scaffold_3179 (3900-4824) | |
| 33-243, gnl|mm7|chr11 (46106752-46105932) | |
| 33-243, gnl|Mm7|chr11 (46106128-46105947) | |
| 33-243, gnl|monDom2|scaffold_6 (47955514-47954485) | |
| 33-243, gnl|oryCun1|scaffold_195898 (29581-30485) | |
| 33-243, gnl|panTro1|chr4 (163964226-163965147) | |
| 33-243, gnl|rheMac2|chr6 (153843677-153844589) | |
| 33-243, gnl|rn3|chr10 (31286450-31285626) | |
| 255-629, gnl|bosTau2|chr7 (47982023-47981640) | |
| 255-629, gnl|canFam2|chr4 (55938696-55938328) | |
| 255-629, gnl|dasNov1|scaffold_35334 (2591-2206) | |
| 255-629, gnl|echTel1|scaffold_276363 (47176-46747) | |
| 255-629, gnl|hg17|chr5 (156833616-156834006) | |
| 255-629, gnl|Hg17|chr5 (156833640-156834014) | |
| 255-629, gnl|loxAfr1|scaffold_3179 (4825-5215) | |
| 255-629, gnl|mm7|chr11 (46105931-46105532) | |
| 255-629, gnl|Mm7|chr11 (46105909-46105527) | |
| 255-629, gnl|monDom2|scaffold_6 (47954484-47953961) | |
| 255-629, gnl|oryCun1|scaffold_195898 (30486-30879) | |
| 255-629, gnl|panTro1|chr4 (163965148-163965538) | |
| 255-629, gnl|rheMac2|chr6 (153844590-153844991) | |
| 255-629, gnl|rn3|chr10 (31285625-31285260) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) |