Ss1.1-Pig2-66F20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACAGTTACCTTTCATCTGGGTCAAAGTCCTCTACTTTGAAGACCCAGGCAGTATAAAT CCTTAATGATCAATTATGTTCTGAATTATTTAAGTCACGGTGAGTTCTATGAGATGGACC TTCTGGTGATGGGTATTAGTTTCCTTTTCCAGAGCTGGTACCCCTCTCTCTGACTTTCCC ATTTGTAGAGCTTTTGGTAACCTGTTTTATTTGATCGTGACTTCAGGTTAAAAGATGTCC TCCGTCCAAGAAGAGAACCCAGTCCATACAAGGAAAAGGCAGAAGTAAAAGGTCAAGCCA TGGTGCCACCGTTACCCCAGCTGTGGGCCGAATGGAGTTGTCTATGGTGAAACCAACTCC AGGCCTGACACCCAGGTTTGACTCAAGGGTCTTCAAGACCCCAGGCCTGCGGACTCCAGC AGCCAGAGAGCGGATTTACAATATCTCCCTGAATGGCAGCCCTCTAGCTGACAGCAAAGA GATCTTCCTCACTGTGCCAGTGGGAGGCGGAGAGAGCATGCGGTTATTGGCCAGTGACTT GCAGAGGATGGACATCGCACAGCTGGATCCAGAGGCCTTGGGAAACATTAAGAAGCTCTC GAGCCGTCTTGCCCAAATCTGCAGCAGCATACGGACTCACAAGTGAAGCTGCTGCTGCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACAGTTACCTTTCATCTGGGTCAAAGTCCTCTACTTTGAAGACCCAGGCAGTATAAAT CCTTAATGATCAATTATGTTCTGAATTATTTAAGTCACGGTGAGTTCTATGAGATGGACC TTCTGGTGATGGGTATTAGTTTCCTTTTCCAGAGCTGGTACCCCTCTCTCTGACTTTCCC ATTTGTAGAGCTTTTGGTAACCTGTTTTATTTGATCGTGACTTCAGGTTAAAAGATGTCC TCCGTCCAAGAAGAGAACCCAGTCCATACAAGGAAAAGGCAGAAGTAAAAGGTCAAGCCA TGGTGCCACCGTTACCCCAGCTGTGGGCCGAATGGAGTTGTCTATGGTGAAACCAACTCC AGGCCTGACACCCAGGTTTGACTCAAGGGTCTTCAAGACCCCAGGCCTGCGGACTCCAGC AGCCAGAGAGCGGATTTACAATATCTCCCTGAATGGCAGCCCTCTAGCTGACAGCAAAGA GATCTTCCTCACTGTGCCAGTGGGAGGCGGAGAGAGCATGCGGTTATTGGCCAGTGACTT GCAGAGGATGGACATCGCACAGCTGGATCCAGAGGCCTTGGGAAACATTAAGAAGCTCTC GAGCCGTCTTGCCCAAATCTGCAGCAGCATACGGACTCACAAGTGAAGCTGCTGCTGCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 168-284, - strand, RNAz p=0.952512 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 168-284, - strand, RNAz p=0.952512 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-293, gnl|bosTau2|chr3 (75478411-75478116) | |
| 1-293, gnl|Hg17|chr1 (37836276-37836585) | |
| 1-293, gnl|Mm7|chr4 (124367045-124366645) | |
| 386-514, gnl|bosTau2|chr3 (75476098-75475970) | |
| 386-514, gnl|canFam2|chr15 (7809455-7809557) | |
| 386-514, gnl|canFam2|chr15 (7809790-7809426) | |
| 386-514, gnl|dasNov1|scaffold_134912 (3657-3759) | |
| 386-514, gnl|dasNov1|scaffold_134912 (3989-3627) | |
| 386-514, gnl|echTel1|scaffold_267001 (9502-9604) | |
| 386-514, gnl|echTel1|scaffold_267001 (9801-9472) | |
| 386-514, gnl|hg17|chr1 (37839974-37840338) | |
| 386-514, gnl|Hg17|chr1 (37840204-37840332) | |
| 386-514, gnl|hg17|chr8 (49269101-49269201) | |
| 386-514, gnl|loxAfr1|scaffold_36793 (6647-6746) | |
| 386-514, gnl|loxAfr1|scaffold_36793 (6952-6617) | |
| 386-514, gnl|mm7|chr4 (124364932-124365034) | |
| 386-514, gnl|mm7|chr4 (124365256-124364903) | |
| 386-514, gnl|Mm7|chr4 (124365034-124364906) | |
| 386-514, gnl|monDom2|scaffold_43 (11855501-11855110) | |
| 386-514, gnl|panTro1|chr1 (38681460-38681823) | |
| 386-514, gnl|panTro1|chr7 (50850308-50850408) | |
| 386-514, gnl|rheMac2|chr19 (19212490-19212855) | |
| 386-514, gnl|rheMac2|chr8 (50723328-50723428) | |
| 386-514, gnl|rn3|chr5 (144263100-144263202) | |
| 386-514, gnl|rn3|chr5 (144263425-144263071) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-293, gnl|bosTau2|chr3 (75478411-75478116) | |
| 1-293, gnl|Hg17|chr1 (37836276-37836585) | |
| 1-293, gnl|Mm7|chr4 (124367045-124366645) | |
| 386-514, gnl|bosTau2|chr3 (75476098-75475970) | |
| 386-514, gnl|canFam2|chr15 (7809455-7809557) | |
| 386-514, gnl|canFam2|chr15 (7809790-7809426) | |
| 386-514, gnl|dasNov1|scaffold_134912 (3657-3759) | |
| 386-514, gnl|dasNov1|scaffold_134912 (3989-3627) | |
| 386-514, gnl|echTel1|scaffold_267001 (9502-9604) | |
| 386-514, gnl|echTel1|scaffold_267001 (9801-9472) | |
| 386-514, gnl|hg17|chr1 (37839974-37840338) | |
| 386-514, gnl|Hg17|chr1 (37840204-37840332) | |
| 386-514, gnl|hg17|chr8 (49269101-49269201) | |
| 386-514, gnl|loxAfr1|scaffold_36793 (6647-6746) | |
| 386-514, gnl|loxAfr1|scaffold_36793 (6952-6617) | |
| 386-514, gnl|mm7|chr4 (124364932-124365034) | |
| 386-514, gnl|mm7|chr4 (124365256-124364903) | |
| 386-514, gnl|Mm7|chr4 (124365034-124364906) | |
| 386-514, gnl|monDom2|scaffold_43 (11855501-11855110) | |
| 386-514, gnl|panTro1|chr1 (38681460-38681823) | |
| 386-514, gnl|panTro1|chr7 (50850308-50850408) | |
| 386-514, gnl|rheMac2|chr19 (19212490-19212855) | |
| 386-514, gnl|rheMac2|chr8 (50723328-50723428) | |
| 386-514, gnl|rn3|chr5 (144263100-144263202) | |
| 386-514, gnl|rn3|chr5 (144263425-144263071) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.202881) | |
| med (0.116252) |