Non-Coding RNA Search

Ss1.1-Pig2-66G21.5

Sequence:


               
               GCTCCCCCTCCCAGCCTCTGTCGGACGATGAAACCAAAGATGACCTGTCCATGTCCTCCT
ACTCGGTGGTCAGCACGGGCTCCCTGCAGTGTGAGGACCTGGCTGACGACACAGTGCTGG
TGGGCGGGGAGGCCCGCAGCCCCGTGACCACCCCCCACTGTGGGGGCACCGTGGACACAG
ACTGGAGCATCTCCTTCGAGCAGATCCTGGCCTCCATCCTGACGGAGTCTGTGCTGGTGA
ACTTCCTTGAGAAGAAGGTAGACATTGGACTCAAGATCAAGGACCAAAAGAAAGTGGAGA
GACAGTTTAGCACCTCCAGTGACCATGAGCAGTCTGCAGCTTTGGGCTGAGGGCTCCAGG
GCCTGGGGGCGGGCCTCTCCGCCTCCCTTTCCATTTGCTCCTTAAGGACACATCCCTCCA
GCTCTCCCCAGAAGCCGTGAGTTGTAAATGGAAAAAAGGCTGAACAACCGCACTCGGGGC
CCGGGCAGAGACTCCCCAGCCCCTCGTCCTGCCTTGGGCCTGCTGGACCCTGTGTAGTGT
CAGGGGCTGTCTGATCTGCCCTCACTTGCCCTGCGCTGTGGCCAGGCCACACCCTGTCCT
CCACCTCTTTTCCTGCAGCTGTGTGCTCTGGAGGCCCTCCTGCCACTTGGCACCAGGTGG
GTGGGGAGGTGGGTGAACACATGTCCATTGGGCACCAAAGTGGTGGGCACTTGGAGATGC
CCTCCCGGAGCCCCTGAGCCGGAGCTCCTGGCTGGGGGACACAGGCAGAAAGCATCTGCT
GCACCAGGGTGGGTGCCTCCTGCGCAGGCGTTAGTCTAAATTCTCTTTCAGCTCATCATC
CTCACCGTTAACCTTAAAAGCATATCCCTCAGGTCCTGATGTATTTCCTTGTATTCATTT
GAGTCACTAAAAATCACACTGTGCTTAAGGCCTTAATAAATCCCTGAAAGATCTAAAAAC
CACATCGTGTAGAGAGAATTAATGTGGCCCTTGACCACTGCCTCCTGGCTTTTCCCCAGG
CTGGTATGGGGTCCAGGCCATGTTCCAGAGTTTCCAGACACTTAGTCCCCACAGGGAGTT
TAAGACCCCCAGGGAAGATGGGCAGGTGGAAGCTGCTGATGCAGGCTGGGCAGAGTCTGC
ACAGACCTCTGCCAGCAGAGGAGGCCCCGAGCTCTGCAGGTGTGAACAGCCTGAGTCCAC
CCGAAAAAGGTGTGTGCTCGGGTCCTTGGGTTCAGGAAGCAGACTGCAGGGACACAGGCA
CCACCTGAGCCCCCAGCTTTGCAGCAGGAGCTGATCATCTGTATCCAGTATTTTCCCCCA
ACACAGGGTTGTTCTTATTTCTCCTGAAAGATACAGCTCTGTGGCTATTTGCTTTTTTTA
AATTTGATAGCTTTATTGAGACAAAACTTACATTGCATTACCATAAAATTTGCTTGTTTT
AGGTTACAGTTCAATGATTTTTAGTAAACCTACAGAGTTGTGCAACCATCACCGCAGTTC
AACTTTAGAATATTTCCATACCCCAGAAAGACCTCTCCTGCCCATTTGCTGCCAATCTGT
GTACCCTCCCCCAGCTCCCGGCAACCACTAATCTATTTTCTCTTTAGTTTTTATGGATGG
TTCTTAAAATAACAATCTCCATGGAGTTTTCTGTGGCACAGCAGGTTAAGGATGTGGCGT
TGTCACTGCAGAAGCTCGGGTCACTGCTGTGGTGCGGGTTCAATCCCTAGCCTGGGAAGT
TACACATGCTGCAGGTGCAGCCAAAAAAAATTAAAAAATAAAAATCTCCATGATTTTAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCCCCCTCCCAGCCTCTGTCGGACGATGAAACCAAAGATGACCTGTCCATGTCCTCCT
ACTCGGTGGTCAGCACGGGCTCCCTGCAGTGTGAGGACCTGGCTGACGACACAGTGCTGG
TGGGCGGGGAGGCCCGCAGCCCCGTGACCACCCCCCACTGTGGGGGCACCGTGGACACAG
ACTGGAGCATCTCCTTCGAGCAGATCCTGGCCTCCATCCTGACGGAGTCTGTGCTGGTGA
ACTTCCTTGAGAAGAAGGTAGACATTGGACTCAAGATCAAGGACCAAAAGAAAGTGGAGA
GACAGTTTAGCACCTCCAGTGACCATGAGCAGTCTGCAGCTTTGGGCTGAGGGCTCCAGG
GCCTGGGGGCGGGCCTCTCCGCCTCCCTTTCCATTTGCTCCTTAAGGACACATCCCTCCA
GCTCTCCCCAGAAGCCGTGAGTTGTAAATGGAAAAAAGGCTGAACAACCGCACTCGGGGC
CCGGGCAGAGACTCCCCAGCCCCTCGTCCTGCCTTGGGCCTGCTGGACCCTGTGTAGTGT
CAGGGGCTGTCTGATCTGCCCTCACTTGCCCTGCGCTGTGGCCAGGCCACACCCTGTCCT
CCACCTCTTTTCCTGCAGCTGTGTGCTCTGGAGGCCCTCCTGCCACTTGGCACCAGGTGG
GTGGGGAGGTGGGTGAACACATGTCCATTGGGCACCAAAGTGGTGGGCACTTGGAGATGC
CCTCCCGGAGCCCCTGAGCCGGAGCTCCTGGCTGGGGGACACAGGCAGAAAGCATCTGCT
GCACCAGGGTGGGTGCCTCCTGCGCAGGCGTTAGTCTAAATTCTCTTTCAGCTCATCATC
CTCACCGTTAACCTTAAAAGCATATCCCTCAGGTCCTGATGTATTTCCTTGTATTCATTT
GAGTCACTAAAAATCACACTGTGCTTAAGGCCTTAATAAATCCCTGAAAGATCTAAAAAC
CACATCGTGTAGAGAGAATTAATGTGGCCCTTGACCACTGCCTCCTGGCTTTTCCCCAGG
CTGGTATGGGGTCCAGGCCATGTTCCAGAGTTTCCAGACACTTAGTCCCCACAGGGAGTT
TAAGACCCCCAGGGAAGATGGGCAGGTGGAAGCTGCTGATGCAGGCTGGGCAGAGTCTGC
ACAGACCTCTGCCAGCAGAGGAGGCCCCGAGCTCTGCAGGTGTGAACAGCCTGAGTCCAC
CCGAAAAAGGTGTGTGCTCGGGTCCTTGGGTTCAGGAAGCAGACTGCAGGGACACAGGCA
CCACCTGAGCCCCCAGCTTTGCAGCAGGAGCTGATCATCTGTATCCAGTATTTTCCCCCA
ACACAGGGTTGTTCTTATTTCTCCTGAAAGATACAGCTCTGTGGCTATTTGCTTTTTTTA
AATTTGATAGCTTTATTGAGACAAAACTTACATTGCATTACCATAAAATTTGCTTGTTTT
AGGTTACAGTTCAATGATTTTTAGTAAACCTACAGAGTTGTGCAACCATCACCGCAGTTC
AACTTTAGAATATTTCCATACCCCAGAAAGACCTCTCCTGCCCATTTGCTGCCAATCTGT
GTACCCTCCCCCAGCTCCCGGCAACCACTAATCTATTTTCTCTTTAGTTTTTATGGATGG
TTCTTAAAATAACAATCTCCATGGAGTTTTCTGTGGCACAGCAGGTTAAGGATGTGGCGT
TGTCACTGCAGAAGCTCGGGTCACTGCTGTGGTGCGGGTTCAATCCCTAGCCTGGGAAGT
TACACATGCTGCAGGTGCAGCCAAAAAAAATTAAAAAATAAAAATCTCCATGATTTTAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9CSQ2_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CSQ2_MOUSE

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               1-1660, gnl|bosTau2|chr7 (607797-606112)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1660, gnl|bosTau2|chr7 (607797-606112)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

	elu (0.385356)
	cbe (0.239234)
	fcc (0.197785)
	nep (0.183925)
	sag (0.182715)
	ill (0.175593)
	nco (0.161734)
	lun (0.150489)
	liv (0.146284)
	lnt (0.142308)
	che (0.136314)
	pla (0.133672)
	ute (0.132784)
	sug (0.127291)
	pgl (0.118483)
	med (0.116252)