Non-Coding RNA Search

Ss1.1-Pig2-66H01.5

Sequence:


               
               TGCCTTGTGTGAACTGGGTATGGAGGCAAGGGCTTGGAGGCTGGACCAGCATCCATCTGT
CAAGGACTGACCTGGAGAGAGGTGCCTCTTGACTTTGGACCACTGCTGACCCCTCATATG
CAGGTCTTGACATGAATGTACCCCGGCTTATGGGTTTGGATTTGGGGCACTTGGCCCTCC
CCACTGAGAGTGAGGGGCCAAGGGATCTCACCAAAGCTGTCTACTCAGCAGCTCTGCTTC
TTTCTTCCTTCCTTGGCCTCTCTCCTTTGCCAACTTCCTCTTCCTTACCCAGTGGGCCTT
GGTTCCCTGGAAATCAACCCCGGGTGGGGGCAGGGAGGAATGGCCTCTCCACTGTTCTTC
AAGGGCCTTGGCAGCCAGGCGTAGGTGGGTAGACTGCAAGAGGGACTGGTAGTCTGCAGT
GCTCTGACTTCCCTCCCTTTGGTTAATAAACACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCTTGTGTGAACTGGGTATGGAGGCAAGGGCTTGGAGGCTGGACCAGCATCCATCTGT
CAAGGACTGACCTGGAGAGAGGTGCCTCTTGACTTTGGACCACTGCTGACCCCTCATATG
CAGGTCTTGACATGAATGTACCCCGGCTTATGGGTTTGGATTTGGGGCACTTGGCCCTCC
CCACTGAGAGTGAGGGGCCAAGGGATCTCACCAAAGCTGTCTACTCAGCAGCTCTGCTTC
TTTCTTCCTTCCTTGGCCTCTCTCCTTTGCCAACTTCCTCTTCCTTACCCAGTGGGCCTT
GGTTCCCTGGAAATCAACCCCGGGTGGGGGCAGGGAGGAATGGCCTCTCCACTGTTCTTC
AAGGGCCTTGGCAGCCAGGCGTAGGTGGGTAGACTGCAAGAGGGACTGGTAGTCTGCAGT
GCTCTGACTTCCCTCCCTTTGGTTAATAAACACAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               145-361, + strand, RNAz p=0.999494

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               145-361, + strand, RNAz p=0.999494

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               179-310, AV592634 Bos taurus cartilage fetus Bos taurus cDNA clone 
(dbj|AV592634.1|), blast E-value=3e-31, identity=88.64% 
               

               
               145-361, DB810025 full-length enriched swine cDNA library, adult liver Sus 
(dbj|DB810025.1|), blast E-value=0, identity=100% 
               

               
               145-361, DB816926 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|DB816926.1|), blast E-value=0, identity=99.54% 
               

               
               179-310, 1Duo10C07 Bos taurus Duodenum #1 library Bos taurus cDNA, mRNA 
(gb|BM431140.1|), blast E-value=3e-31, identity=88.64% 
               

               
               179-310, UMC-bend_0B02-005-c04 Day 5 Uterus bend Bos taurus cDNA 3', mRNA 
(gb|CK729276.1|), blast E-value=3e-31, identity=88.64% 
               

               
               179-310, UMC-bov_0B02-012-d01 Day 3 Oviduct bov Bos taurus cDNA 3', mRNA 
(gb|CO729120.1|), blast E-value=3e-31, identity=88.64%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               179-310, AV592634 Bos taurus cartilage fetus Bos taurus cDNA clone 
(dbj|AV592634.1|), blast E-value=3e-31, identity=88.64% 
               

               
               145-361, DB810025 full-length enriched swine cDNA library, adult liver Sus 
(dbj|DB810025.1|), blast E-value=0, identity=100% 
               

               
               145-361, DB816926 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|DB816926.1|), blast E-value=0, identity=99.54% 
               

               
               179-310, 1Duo10C07 Bos taurus Duodenum #1 library Bos taurus cDNA, mRNA 
(gb|BM431140.1|), blast E-value=3e-31, identity=88.64% 
               

               
               179-310, UMC-bend_0B02-005-c04 Day 5 Uterus bend Bos taurus cDNA 3', mRNA 
(gb|CK729276.1|), blast E-value=3e-31, identity=88.64% 
               

               
               179-310, UMC-bov_0B02-012-d01 Day 3 Oviduct bov Bos taurus cDNA 3', mRNA 
(gb|CO729120.1|), blast E-value=3e-31, identity=88.64%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-456, gnl|bosTau2|chr13 (41819171-41818734)
               

               
               1-456, gnl|Hg17|chr20 (774439-774906)
               

               
               1-456, gnl|Mm7|chr2 (151710713-151710270)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-456, gnl|bosTau2|chr13 (41819171-41818734)
               

               
               1-456, gnl|Hg17|chr20 (774439-774906)
               

               
               1-456, gnl|Mm7|chr2 (151710713-151710270)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	179-310, AV592634 Bos taurus cartilage fetus Bos taurus cDNA clone (dbj\|AV592634.1\|), blast E-value=3e-31, identity=88.64%
	145-361, DB810025 full-length enriched swine cDNA library, adult liver Sus (dbj\|DB810025.1\|), blast E-value=0, identity=100%
	145-361, DB816926 full-length enriched swine cDNA library, adult spleen Sus (dbj\|DB816926.1\|), blast E-value=0, identity=99.54%
	179-310, 1Duo10C07 Bos taurus Duodenum #1 library Bos taurus cDNA, mRNA (gb\|BM431140.1\|), blast E-value=3e-31, identity=88.64%
	179-310, UMC-bend_0B02-005-c04 Day 5 Uterus bend Bos taurus cDNA 3', mRNA (gb\|CK729276.1\|), blast E-value=3e-31, identity=88.64%
	179-310, UMC-bov_0B02-012-d01 Day 3 Oviduct bov Bos taurus cDNA 3', mRNA (gb\|CO729120.1\|), blast E-value=3e-31, identity=88.64%

	1-456, gnl\|bosTau2\|chr13 (41819171-41818734)
	1-456, gnl\|Hg17\|chr20 (774439-774906)
	1-456, gnl\|Mm7\|chr2 (151710713-151710270)