Non-Coding RNA Search

Ss1.1-Pig2-66H04.5

Sequence:


               
               GCGGCCCCCCGCCCGCCTCGCGCGATCTCCGTCTCGGCTCCGGTTTTTTACGCCCCGCAG
AAGAAGTTCGGCCCGGTGGTGGCCCCAAAGCCCAAAGTGAATCCTTTCCGGCCCGGGGAC
GGTGAGCCTCCCGCGGCGGCCGGGGCCCAACGCGCACAGATGGGCCGAGTGGGCGAGATC
CCCCCACCGCCCCCAGAAGACTTTCCTTTACCGCCGCCTCCCGTGCTGGGGGAGGCCGAC
GAGGCGGAGGGCGCCCTGGGAGGTGCTTTCCCTCCCCCTCCTCCCCCGATCGAGGAACCG
TTTCCCCCTGCGCCTTTGGAGGAGGAGATCTTCCCTTCCCCGCCGCCCCCGCTGGTGGAG
GAGGGAGGGCCTGAGGTCCCCATACAGCTCCCACCACAGCCCAGGGATAAAGTGAGCAGT
ATTGATCTGGAGATTGACTCTCTGTCCTCACTGCTGGATGACATGACCAAGAATGATCCC
TTCAAAGCCCGGGTGTCATCTGGATATGTACCCCCACCGGTCTCCACGCCATTCATTTCC
AAGTCCAATACCAAGCCTGCACCTGGGGGCACAGCCCCCCTGCCTCCCTGGAAGTCTGCT
TCCAGCTCCCAGCCTTTGTCCCAGGCCCAGCCTCAGAGCCAAACGCACTTCCATGTGCAG
CCCCAGCCCCAGGCCAAGCCTCAGGTCCAGCTCCATGTCCAGCCCCAGGCCCAGCCCCAG
CCTGTGCCTTCGGCTAACACCCAGCCTCGGGGTCCCCCAGCCCCATCTCCCACCCCTAAG
TTTTCTCCAGTGACTCCCAAGTTTACTCCTGTGGCTTCCAAGTTCAGCCCTGGAGCACCA
GGTGGACCTGGGTCACAGCCCAGTCGAAAGTCAGGGCCCCCTGAAGCTCCTTCCACTGGC
ACAGGCTCTGCTCAGCCTCCCAGCTTCACTTATGCTCAGCAGAGGGAGAAGCCCCAAGTG
CAAGAGAAGCAGCACCCAGTGCCCCCACCAGCTCCAAACCAAAACCAGGTGCGCTCCTCT
GGGGCCCCAGGACCTCTGACTCTGAAGGAGGTGGAGGAGCTGGAGCAGCTGACCCAGCAG
CTGATGCAGGACATGGAGCATCCTCAGAGGCAGAATGTGGCCGTGAATGAGTTCTGCGGC
CGGTGTCGCCAGCCCCTGGCACGGGCGCAGCCGGCTGTTCGCGCTCTCGGGCAGCTGTTT
CACATCACCTGCTTTACCTGCCACCAGTGTGAGCAGCAGCTGCAGGGACAGCAGTTCTAC
AGCCTGGAGGGGGCGCCGTACTGTGAGGGCTGCTATACTGACACCCTGGAGAAGTGCAAC
ACCTGTGGGCAGCCCATCACGGACCGCATGCTAAGGGCCACCGGCAAAGCCTACCACCCG
CAGTGCTTCACCTGTGTGGTCTGCGCCTGCCCCCTGGAGGGCACCTCGTTCATCGTGGAC
CAGGCCAACCGGCCCCACTGCGTCCCCGACTACCACAAGCAGTACGCCCCCCGGTGCTCC
GTCTGCGCAGAGCCCATCATGCCAGAGCCTGGCCGCGAGGAGACCGTGCGTGTGGTCGCG
CTGGACAAGAACTTCCACATGAAGTGCTACAAGTGTGAGGACTGTGGGAAGCCGCTGTCC
ATTGAGGCGGATGACAACGGCTGCTTCCCCTTGGATGGCCACGTGCTCTGCCGGAAATGC
CACACCACCAGAGCCCAGACCTGAGTGAGGACTGGCCCCGTTCTCCACTGCAGATCCATT
CCCCATCAGCAGACCCCCCCACAATGAGACCACCCTGTCCAACCATCCACCCTCCTTCCC
TACCACCCTGTTTTTTGATGTCCCCTTTCCATACCAGACCTCATCCCTGCATCCCTCCTG
CCCTGATCCAGGGCCCCAACATGCTTCAGGGCTGCAGAGTCCCAGCCCTGGGGTCCAGTC
CTCCCCGATCCTGCAGGGACCACCCACCACAGTCCAGGTACCCCCCCACCTCCCCCCGAG
GGGGCCAGGCTGAGCGCTGCTGCTTTCACTGCTGCACCGATGCCCTCGGCTGGCCCTTGA
GCAGCCTAGTACTCTGCTTGCTGAGGGCTCGGGGATGCCCTACCCTTCTGGGAGACTGGG
CTGGGCTCACCAGCCTGGACGTTCCCACCTGCTCCTGTGCTGCCCGGTTGTGGCTACAGC
TACAAATAAAAGACCTTGTTTTCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCCCCCGCCCGCCTCGCGCGATCTCCGTCTCGGCTCCGGTTTTTTACGCCCCGCAG
AAGAAGTTCGGCCCGGTGGTGGCCCCAAAGCCCAAAGTGAATCCTTTCCGGCCCGGGGAC
GGTGAGCCTCCCGCGGCGGCCGGGGCCCAACGCGCACAGATGGGCCGAGTGGGCGAGATC
CCCCCACCGCCCCCAGAAGACTTTCCTTTACCGCCGCCTCCCGTGCTGGGGGAGGCCGAC
GAGGCGGAGGGCGCCCTGGGAGGTGCTTTCCCTCCCCCTCCTCCCCCGATCGAGGAACCG
TTTCCCCCTGCGCCTTTGGAGGAGGAGATCTTCCCTTCCCCGCCGCCCCCGCTGGTGGAG
GAGGGAGGGCCTGAGGTCCCCATACAGCTCCCACCACAGCCCAGGGATAAAGTGAGCAGT
ATTGATCTGGAGATTGACTCTCTGTCCTCACTGCTGGATGACATGACCAAGAATGATCCC
TTCAAAGCCCGGGTGTCATCTGGATATGTACCCCCACCGGTCTCCACGCCATTCATTTCC
AAGTCCAATACCAAGCCTGCACCTGGGGGCACAGCCCCCCTGCCTCCCTGGAAGTCTGCT
TCCAGCTCCCAGCCTTTGTCCCAGGCCCAGCCTCAGAGCCAAACGCACTTCCATGTGCAG
CCCCAGCCCCAGGCCAAGCCTCAGGTCCAGCTCCATGTCCAGCCCCAGGCCCAGCCCCAG
CCTGTGCCTTCGGCTAACACCCAGCCTCGGGGTCCCCCAGCCCCATCTCCCACCCCTAAG
TTTTCTCCAGTGACTCCCAAGTTTACTCCTGTGGCTTCCAAGTTCAGCCCTGGAGCACCA
GGTGGACCTGGGTCACAGCCCAGTCGAAAGTCAGGGCCCCCTGAAGCTCCTTCCACTGGC
ACAGGCTCTGCTCAGCCTCCCAGCTTCACTTATGCTCAGCAGAGGGAGAAGCCCCAAGTG
CAAGAGAAGCAGCACCCAGTGCCCCCACCAGCTCCAAACCAAAACCAGGTGCGCTCCTCT
GGGGCCCCAGGACCTCTGACTCTGAAGGAGGTGGAGGAGCTGGAGCAGCTGACCCAGCAG
CTGATGCAGGACATGGAGCATCCTCAGAGGCAGAATGTGGCCGTGAATGAGTTCTGCGGC
CGGTGTCGCCAGCCCCTGGCACGGGCGCAGCCGGCTGTTCGCGCTCTCGGGCAGCTGTTT
CACATCACCTGCTTTACCTGCCACCAGTGTGAGCAGCAGCTGCAGGGACAGCAGTTCTAC
AGCCTGGAGGGGGCGCCGTACTGTGAGGGCTGCTATACTGACACCCTGGAGAAGTGCAAC
ACCTGTGGGCAGCCCATCACGGACCGCATGCTAAGGGCCACCGGCAAAGCCTACCACCCG
CAGTGCTTCACCTGTGTGGTCTGCGCCTGCCCCCTGGAGGGCACCTCGTTCATCGTGGAC
CAGGCCAACCGGCCCCACTGCGTCCCCGACTACCACAAGCAGTACGCCCCCCGGTGCTCC
GTCTGCGCAGAGCCCATCATGCCAGAGCCTGGCCGCGAGGAGACCGTGCGTGTGGTCGCG
CTGGACAAGAACTTCCACATGAAGTGCTACAAGTGTGAGGACTGTGGGAAGCCGCTGTCC
ATTGAGGCGGATGACAACGGCTGCTTCCCCTTGGATGGCCACGTGCTCTGCCGGAAATGC
CACACCACCAGAGCCCAGACCTGAGTGAGGACTGGCCCCGTTCTCCACTGCAGATCCATT
CCCCATCAGCAGACCCCCCCACAATGAGACCACCCTGTCCAACCATCCACCCTCCTTCCC
TACCACCCTGTTTTTTGATGTCCCCTTTCCATACCAGACCTCATCCCTGCATCCCTCCTG
CCCTGATCCAGGGCCCCAACATGCTTCAGGGCTGCAGAGTCCCAGCCCTGGGGTCCAGTC
CTCCCCGATCCTGCAGGGACCACCCACCACAGTCCAGGTACCCCCCCACCTCCCCCCGAG
GGGGCCAGGCTGAGCGCTGCTGCTTTCACTGCTGCACCGATGCCCTCGGCTGGCCCTTGA
GCAGCCTAGTACTCTGCTTGCTGAGGGCTCGGGGATGCCCTACCCTTCTGGGAGACTGGG
CTGGGCTCACCAGCCTGGACGTTCCCACCTGCTCCTGTGCTGCCCGGTTGTGGCTACAGC
TACAAATAAAAGACCTTGTTTTCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6I9S4_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6I9S4_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               198-393, - strand, RNAz p=0.812979
               

               
               759-989, - strand, RNAz p=0.977297

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-393, - strand, RNAz p=0.812979
               

               
               759-989, - strand, RNAz p=0.977297

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               198-399, gnl|bosTau2|chr4 (57700661-57700460)
               

               
               198-399, gnl|Hg17|chr7 (142596176-142596377)
               

               
               198-399, gnl|Mm7|chr6 (42293926-42294130)
               


               
               658-1011, gnl|bosTau2|chr4 (57699952-57699596)
               

               
               658-1011, gnl|Hg17|chr7 (142596878-142597255)
               

               
               658-1011, gnl|Mm7|chr6 (42294598-42294954)
               


               
               1210-1683, gnl|bosTau2|chr23 (39394829-39395290)
               

               
               1210-1683, gnl|Hg17|chr11 (46121221-46121691)
               

               
               1210-1683, gnl|Mm7|chr4 (140963226-140956301)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               198-399, gnl|bosTau2|chr4 (57700661-57700460)
               

               
               198-399, gnl|Hg17|chr7 (142596176-142596377)
               

               
               198-399, gnl|Mm7|chr6 (42293926-42294130)
               


               
               658-1011, gnl|bosTau2|chr4 (57699952-57699596)
               

               
               658-1011, gnl|Hg17|chr7 (142596878-142597255)
               

               
               658-1011, gnl|Mm7|chr6 (42294598-42294954)
               


               
               1210-1683, gnl|bosTau2|chr23 (39394829-39395290)
               

               
               1210-1683, gnl|Hg17|chr11 (46121221-46121691)
               

               
               1210-1683, gnl|Mm7|chr4 (140963226-140956301)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               nlu (0.383362)
               

               
               lnt (0.284616)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.383362)
               

               
               lnt (0.284616)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	198-393, - strand, RNAz p=0.812979
	759-989, - strand, RNAz p=0.977297

	198-399, gnl\|bosTau2\|chr4 (57700661-57700460)
	198-399, gnl\|Hg17\|chr7 (142596176-142596377)
	198-399, gnl\|Mm7\|chr6 (42293926-42294130)

	658-1011, gnl\|bosTau2\|chr4 (57699952-57699596)
	658-1011, gnl\|Hg17\|chr7 (142596878-142597255)
	658-1011, gnl\|Mm7\|chr6 (42294598-42294954)

	1210-1683, gnl\|bosTau2\|chr23 (39394829-39395290)
	1210-1683, gnl\|Hg17\|chr11 (46121221-46121691)
	1210-1683, gnl\|Mm7\|chr4 (140963226-140956301)

	nlu (0.383362)
	lnt (0.284616)
	eru (0.240096)
	ece (0.229305)
	fty (0.17584)
	ill (0.175593)
	mcp (0.170648)
	fhi (0.169578)
	csp (0.161186)
	pla (0.133672)
	ute (0.132784)
	cly (0.120642)
	nbm (0.0993246)
	jej (0.0989218)